********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.204 C 0.296 G 0.296 T 0.204 

MOTIF 1-CAGGTTCT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 5.0e-001
 0.004799 0.820707 0.006941 0.167553
 0.981319 0.006941 0.006941 0.004799
 0.004799 0.169694 0.820707 0.004799
 0.167553 0.169694 0.657954 0.004799
 0.004799 0.006941 0.006941 0.981319
 0.004799 0.006941 0.169694 0.818566
 0.004799 0.657954 0.169694 0.167553
 0.004799 0.006941 0.169694 0.818566

MOTIF 2-CATTGGCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.002381 0.830283 0.084199 0.083137
 0.909976 0.003444 0.084199 0.002381
 0.002381 0.003444 0.003444 0.990731
 0.002381 0.084199 0.003444 0.909976
 0.083137 0.084199 0.830283 0.002381
 0.002381 0.003444 0.911038 0.083137
 0.002381 0.830283 0.084199 0.083137
 0.002381 0.649485 0.084199 0.263934

MOTIF 3-CAGTGCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.003621 0.987522 0.005236 0.003621
 0.740335 0.128022 0.128022 0.003621
 0.003621 0.128022 0.864736 0.003621
 0.003621 0.128022 0.005236 0.863121
 0.249192 0.005236 0.741951 0.003621
 0.126407 0.864736 0.005236 0.003621
 0.003621 0.864736 0.128022 0.003621
 0.003621 0.741951 0.250808 0.003621

MOTIF 4-GAGCGGCS STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.005300 0.007665 0.981736 0.005300
 0.979371 0.007665 0.007665 0.005300
 0.005300 0.187391 0.622283 0.185026
 0.005300 0.981736 0.007665 0.005300
 0.005300 0.007665 0.981736 0.005300
 0.005300 0.007665 0.981736 0.005300
 0.005300 0.907564 0.081836 0.005300
 0.185026 0.368385 0.441289 0.005300

MOTIF 5-AGGKTGMG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.900032 0.093500 0.003824 0.002644
 0.002644 0.003824 0.990887 0.002644
 0.002644 0.003824 0.990887 0.002644
 0.002644 0.183175 0.272851 0.541330
 0.271671 0.003824 0.003824 0.720681
 0.002644 0.003824 0.990887 0.002644
 0.451654 0.541877 0.003824 0.002644
 0.181995 0.003824 0.811536 0.002644

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZNF622.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZNF622/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n05.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.45 seconds
********************************************************************************