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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.304 C 0.196 G 0.196 T 0.304 

MOTIF 1-CCCTCTAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.003225 0.991477 0.002074 0.003225
 0.076679 0.918022 0.002074 0.003225
 0.003225 0.918022 0.075528 0.003225
 0.003225 0.075528 0.075528 0.845719
 0.003225 0.991477 0.002074 0.003225
 0.076679 0.223147 0.002074 0.698100
 0.696303 0.002074 0.298399 0.003225
 0.003225 0.813289 0.180261 0.003225

MOTIF 2-AGAAAGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.936755 0.017791 0.017791 0.027664
 0.027664 0.017791 0.926882 0.027664
 0.936755 0.017791 0.017791 0.027664
 0.936755 0.017791 0.017791 0.027664
 0.936755 0.017791 0.017791 0.027664
 0.027664 0.017791 0.926882 0.027664
 0.936755 0.017791 0.017791 0.027664
 0.936755 0.017791 0.017791 0.027664

MOTIF 3-CGGGAGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.007141 0.981125 0.004593 0.007141
 0.169809 0.004593 0.818457 0.007141
 0.169809 0.004593 0.818457 0.007141
 0.007141 0.004593 0.981125 0.007141
 0.821005 0.004593 0.167261 0.007141
 0.007141 0.004593 0.981125 0.007141
 0.821005 0.004593 0.167261 0.007141
 0.983673 0.004593 0.004593 0.007141

MOTIF 4-CTATAATT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.202925 0.783053 0.005488 0.008534
 0.202925 0.005488 0.005488 0.786098
 0.980489 0.005488 0.005488 0.008534
 0.202925 0.005488 0.005488 0.786098
 0.980489 0.005488 0.005488 0.008534
 0.980489 0.005488 0.005488 0.008534
 0.202925 0.005488 0.005488 0.786098
 0.202925 0.005488 0.199879 0.591707

MOTIF 5-CTGCCATC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.027664 0.926882 0.017791 0.027664
 0.027664 0.017791 0.017791 0.936755
 0.027664 0.017791 0.926882 0.027664
 0.027664 0.926882 0.017791 0.027664
 0.027664 0.926882 0.017791 0.027664
 0.936755 0.017791 0.017791 0.027664
 0.027664 0.017791 0.017791 0.936755
 0.027664 0.926882 0.017791 0.027664

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZNF384.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZNF384/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.84 seconds
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