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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-YCAGGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.6e-001
 0.004183 0.381570 0.002645 0.611602
 0.098838 0.610064 0.192260 0.098838
 0.990527 0.002645 0.002645 0.004183
 0.098838 0.002645 0.894334 0.004183
 0.043367 0.002645 0.760495 0.193493
 0.098838 0.894334 0.002645 0.004183
 0.990527 0.002645 0.002645 0.004183
 0.800912 0.002645 0.002645 0.193797

MOTIF 2-TGAMWGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 8.3e-001
 0.004824 0.003051 0.003051 0.989075
 0.004824 0.003051 0.987301 0.004824
 0.770392 0.003051 0.221733 0.004824
 0.661226 0.330899 0.003051 0.004824
 0.333377 0.003051 0.112216 0.551356
 0.004824 0.003051 0.987301 0.004824
 0.879909 0.003051 0.003051 0.113990
 0.989075 0.003051 0.003051 0.004824

MOTIF 3-CAACTCAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 8.8e-001
 0.027845 0.926700 0.017609 0.027845
 0.936936 0.017609 0.017609 0.027845
 0.936936 0.017609 0.017609 0.027845
 0.027845 0.926700 0.017609 0.027845
 0.027845 0.017609 0.017609 0.936936
 0.027845 0.926700 0.017609 0.027845
 0.936936 0.017609 0.017609 0.027845
 0.027845 0.017609 0.017609 0.936936

MOTIF 4-ATTTATTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.640384 0.001645 0.060504 0.297467
 0.061460 0.001645 0.001645 0.935250
 0.002601 0.237082 0.001645 0.758672
 0.002601 0.001645 0.001645 0.994109
 0.836252 0.001645 0.100643 0.061460
 0.002601 0.001645 0.060504 0.935250
 0.179179 0.119363 0.001645 0.699813
 0.002601 0.875435 0.060504 0.061460

MOTIF 5-CTCCTCAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.027845 0.926700 0.017609 0.027845
 0.027845 0.017609 0.017609 0.936936
 0.027845 0.926700 0.017609 0.027845
 0.027845 0.926700 0.017609 0.027845
 0.027845 0.017609 0.017609 0.936936
 0.027845 0.926700 0.017609 0.027845
 0.936936 0.017609 0.017609 0.027845
 0.027845 0.017609 0.017609 0.936936

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZNF24.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZNF24/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.65 seconds
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