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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.149 C 0.351 G 0.351 T 0.149 

MOTIF 1-CGCCCACT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 2.4e-001
 0.013536 0.941009 0.031918 0.013536
 0.013536 0.031918 0.941009 0.013536
 0.013536 0.941009 0.031918 0.013536
 0.013536 0.941009 0.031918 0.013536
 0.013536 0.941009 0.031918 0.013536
 0.922627 0.031918 0.031918 0.013536
 0.013536 0.941009 0.031918 0.013536
 0.013536 0.031918 0.031918 0.922627

MOTIF 2-GCCCCGCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.114984 0.002877 0.880919 0.001220
 0.058011 0.937893 0.002877 0.001220
 0.058011 0.937893 0.002877 0.001220
 0.001220 0.937893 0.002877 0.058011
 0.114984 0.767155 0.002877 0.114984
 0.001220 0.002877 0.880919 0.114984
 0.024730 0.971174 0.002877 0.001220
 0.001220 0.880919 0.002877 0.114984

MOTIF 3-AGTCCGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.937353 0.005912 0.054228 0.002507
 0.119222 0.005912 0.872359 0.002507
 0.002507 0.239717 0.239717 0.518058
 0.002507 0.989074 0.005912 0.002507
 0.002507 0.989074 0.005912 0.002507
 0.119222 0.005912 0.872359 0.002507
 0.985669 0.005912 0.005912 0.002507
 0.002507 0.005912 0.989074 0.002507

MOTIF 4-GAGAAGAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.003496 0.008244 0.984764 0.003496
 0.817263 0.008244 0.170997 0.003496
 0.003496 0.170997 0.822010 0.003496
 0.980016 0.008244 0.008244 0.003496
 0.654509 0.170997 0.008244 0.166249
 0.003496 0.008244 0.984764 0.003496
 0.654509 0.170997 0.008244 0.166249
 0.003496 0.984764 0.008244 0.003496

MOTIF 5-AGCGCACC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.922627 0.031918 0.031918 0.013536
 0.013536 0.031918 0.941009 0.013536
 0.013536 0.941009 0.031918 0.013536
 0.013536 0.031918 0.941009 0.013536
 0.013536 0.941009 0.031918 0.013536
 0.922627 0.031918 0.031918 0.013536
 0.013536 0.941009 0.031918 0.013536
 0.013536 0.941009 0.031918 0.013536

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZNF207.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZNF207/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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