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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.181 C 0.319 G 0.319 T 0.181 

MOTIF 1-TCCCAGVA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 2.4e-001
 0.067934 0.002169 0.002169 0.927728
 0.001234 0.995363 0.002169 0.001234
 0.001234 0.995363 0.002169 0.001234
 0.001234 0.995363 0.002169 0.001234
 0.994428 0.002169 0.002169 0.001234
 0.162735 0.143838 0.692193 0.001234
 0.418836 0.238639 0.341291 0.001234
 0.738023 0.002169 0.258575 0.001234

MOTIF 2-ACTACAHT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.930865 0.065880 0.002075 0.001180
 0.001180 0.950440 0.002075 0.046305
 0.001180 0.219934 0.002075 0.776811
 0.795346 0.182719 0.002075 0.019860
 0.001180 0.995565 0.002075 0.001180
 0.885741 0.065880 0.002075 0.046305
 0.399248 0.232026 0.123097 0.245629
 0.019860 0.315046 0.002075 0.663019

MOTIF 3-GCCCGCCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 9.5e-001
 0.001037 0.001822 0.996104 0.001037
 0.120078 0.718128 0.121119 0.040675
 0.057083 0.860782 0.041460 0.040675
 0.001037 0.996104 0.001822 0.001037
 0.001037 0.018231 0.860398 0.120334
 0.199737 0.638852 0.001822 0.159588
 0.120334 0.837169 0.041460 0.001037
 0.040675 0.227298 0.691353 0.040675

MOTIF 4-MCAGCGCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.283800 0.566265 0.146276 0.003658
 0.003658 0.986254 0.006430 0.003658
 0.983482 0.006430 0.006430 0.003658
 0.003658 0.146276 0.846408 0.003658
 0.003658 0.986254 0.006430 0.003658
 0.003658 0.006430 0.986254 0.003658
 0.003658 0.986254 0.006430 0.003658
 0.003658 0.006430 0.846408 0.143504

MOTIF 5-CAGCCGCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.005075 0.980929 0.008921 0.005075
 0.977083 0.008921 0.008921 0.005075
 0.005075 0.202947 0.786903 0.005075
 0.005075 0.980929 0.008921 0.005075
 0.005075 0.980929 0.008921 0.005075
 0.005075 0.202947 0.786903 0.005075
 0.005075 0.980929 0.008921 0.005075
 0.005075 0.008921 0.008921 0.977083

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZNF143.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZNF143/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.67 seconds
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