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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.167 C 0.333 G 0.333 T 0.167 

MOTIF 1-TCASSTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 88 P= 3.6e-001
 0.221091 0.105712 0.105555 0.567643
 0.039204 0.844438 0.027202 0.089156
 0.888820 0.018416 0.079918 0.012846
 0.044353 0.447617 0.460040 0.047990
 0.047990 0.460040 0.447617 0.044353
 0.012846 0.079918 0.018416 0.888820
 0.089156 0.027202 0.844438 0.039204
 0.567643 0.105555 0.105712 0.221091

MOTIF 2-CCGCACAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.004332 0.982690 0.008646 0.004332
 0.004332 0.908212 0.083124 0.004332
 0.004332 0.008646 0.982690 0.004332
 0.004332 0.802777 0.188559 0.004332
 0.798463 0.188559 0.008646 0.004332
 0.004332 0.802777 0.008646 0.184245
 0.978376 0.008646 0.008646 0.004332
 0.004332 0.188559 0.802777 0.004332

MOTIF 3-ATCCCSGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.843275 0.146633 0.006724 0.003369
 0.003369 0.006724 0.006724 0.983184
 0.003369 0.986539 0.006724 0.003369
 0.003369 0.986539 0.006724 0.003369
 0.003369 0.706270 0.286992 0.003369
 0.143278 0.286542 0.566811 0.003369
 0.003369 0.006724 0.986539 0.003369
 0.003369 0.006724 0.846630 0.143278

MOTIF 4-ACGGCCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.924264 0.030282 0.030282 0.015173
 0.015173 0.939373 0.030282 0.015173
 0.015173 0.030282 0.939373 0.015173
 0.015173 0.030282 0.939373 0.015173
 0.015173 0.939373 0.030282 0.015173
 0.015173 0.939373 0.030282 0.015173
 0.924264 0.030282 0.030282 0.015173
 0.015173 0.939373 0.030282 0.015173

MOTIF 5-GGRGGCAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.001452 0.002898 0.994197 0.001452
 0.182384 0.002898 0.571439 0.243278
 0.569993 0.123520 0.305035 0.001452
 0.001452 0.002898 0.994197 0.001452
 0.001452 0.002898 0.994197 0.001452
 0.001452 0.969231 0.027865 0.001452
 0.751508 0.002898 0.244141 0.001452
 0.001452 0.063209 0.933887 0.001452

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZEB1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZEB1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.60 seconds
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