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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.264 C 0.236 G 0.236 T 0.264 

MOTIF 1-CAATAAAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 61 P= 3.5e-001
 0.186513 0.618511 0.068478 0.126499
 0.929093 0.001145 0.068478 0.001283
 0.996426 0.001145 0.001145 0.001283
 0.001283 0.136137 0.116081 0.746499
 0.948823 0.048749 0.001145 0.001283
 0.948823 0.001145 0.048749 0.001283
 0.915156 0.001145 0.082415 0.001283
 0.388071 0.001145 0.609501 0.001283

MOTIF 2-GACCCGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.182962 0.092678 0.720944 0.003416
 0.811228 0.092678 0.092678 0.003416
 0.003416 0.810861 0.092678 0.093045
 0.003416 0.900490 0.003049 0.093045
 0.003416 0.990118 0.003049 0.003416
 0.003416 0.003049 0.990118 0.003416
 0.003416 0.003049 0.900490 0.093045
 0.990486 0.003049 0.003049 0.003416

MOTIF 3-AAGTGAKG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.982732 0.005534 0.005534 0.006200
 0.657396 0.005534 0.168202 0.168868
 0.006200 0.005534 0.982066 0.006200
 0.006200 0.168202 0.005534 0.820064
 0.006200 0.005534 0.982066 0.006200
 0.820064 0.005534 0.005534 0.168868
 0.006200 0.005534 0.656729 0.331536
 0.006200 0.005534 0.982066 0.006200

MOTIF 4-AGGGCTTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.820064 0.005534 0.005534 0.168868
 0.006200 0.005534 0.982066 0.006200
 0.168868 0.005534 0.819398 0.006200
 0.168868 0.005534 0.819398 0.006200
 0.006200 0.982066 0.005534 0.006200
 0.006200 0.005534 0.005534 0.982732
 0.006200 0.005534 0.168202 0.820064
 0.006200 0.982066 0.005534 0.006200

MOTIF 5-GACGCCGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.004680 0.004177 0.986463 0.004680
 0.741394 0.126963 0.126963 0.004680
 0.127466 0.863677 0.004177 0.004680
 0.004680 0.126963 0.863677 0.004680
 0.127466 0.863677 0.004177 0.004680
 0.004680 0.986463 0.004177 0.004680
 0.127466 0.004177 0.863677 0.004680
 0.004680 0.863677 0.126963 0.004680

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZBTB40.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZBTB40/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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