********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.19 C 0.31 G 0.31 T 0.19 

MOTIF 1-GGGMGGGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.175485 0.003871 0.818281 0.002363
 0.002363 0.003871 0.991403 0.002363
 0.002363 0.003871 0.991403 0.002363
 0.643789 0.349977 0.003871 0.002363
 0.211261 0.003871 0.782505 0.002363
 0.002363 0.090294 0.904981 0.002363
 0.002363 0.003871 0.731998 0.261768
 0.002363 0.003871 0.991403 0.002363

MOTIF 2-TCGCGRKA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 5.0e-001
 0.001010 0.001654 0.001654 0.995682
 0.001010 0.996327 0.001654 0.001010
 0.001010 0.001654 0.996327 0.001010
 0.001010 0.776172 0.001654 0.221164
 0.001010 0.038579 0.959402 0.001010
 0.621975 0.045642 0.331374 0.001010
 0.001010 0.022356 0.569569 0.407065
 0.827279 0.001654 0.170057 0.001010

MOTIF 3-ACTTCCGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.926318 0.028227 0.028227 0.017227
 0.017227 0.937318 0.028227 0.017227
 0.017227 0.028227 0.028227 0.926318
 0.017227 0.028227 0.028227 0.926318
 0.017227 0.937318 0.028227 0.017227
 0.017227 0.937318 0.028227 0.017227
 0.017227 0.028227 0.937318 0.017227
 0.017227 0.028227 0.937318 0.017227

MOTIF 4-AMRGCYKT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.880742 0.077060 0.040182 0.002016
 0.386062 0.424228 0.040182 0.149528
 0.386062 0.040182 0.424228 0.149528
 0.112650 0.092326 0.756129 0.038894
 0.038894 0.756129 0.092326 0.112650
 0.149528 0.424228 0.040182 0.386062
 0.149528 0.040182 0.424228 0.386062
 0.002016 0.040182 0.077060 0.880742

MOTIF 5-CGCCCGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.017227 0.937318 0.028227 0.017227
 0.017227 0.028227 0.937318 0.017227
 0.017227 0.937318 0.028227 0.017227
 0.017227 0.937318 0.028227 0.017227
 0.017227 0.937318 0.028227 0.017227
 0.017227 0.028227 0.937318 0.017227
 0.017227 0.937318 0.028227 0.017227
 0.017227 0.028227 0.937318 0.017227

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZBTB33.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZBTB33/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.67 seconds
********************************************************************************