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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.246 C 0.254 G 0.254 T 0.246 

MOTIF 1-ACAGTGAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 7.6e-001
 0.784463 0.007123 0.201514 0.006899
 0.006899 0.784688 0.007123 0.201290
 0.784463 0.007123 0.007123 0.201290
 0.006899 0.007123 0.979079 0.006899
 0.006899 0.007123 0.007123 0.978854
 0.006899 0.007123 0.979079 0.006899
 0.978854 0.007123 0.007123 0.006899
 0.006899 0.784688 0.201514 0.006899

MOTIF 2-AGSATWTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 8.3e-001
 0.995065 0.001662 0.001662 0.001610
 0.001610 0.001662 0.995117 0.001610
 0.001610 0.311431 0.466316 0.220643
 0.575780 0.175328 0.001662 0.247230
 0.001610 0.148741 0.247283 0.602367
 0.594560 0.001662 0.047030 0.356747
 0.175275 0.092398 0.220695 0.511631
 0.001610 0.001662 0.047030 0.949697

MOTIF 3-TCRYGACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.001480 0.001528 0.001528 0.995463
 0.001480 0.953805 0.043235 0.001480
 0.336380 0.001528 0.660612 0.001480
 0.043186 0.292606 0.143912 0.520295
 0.001480 0.001528 0.870258 0.126733
 0.953757 0.043235 0.001528 0.001480
 0.043186 0.811153 0.001528 0.144133
 0.752402 0.001528 0.227325 0.018745

MOTIF 4-ATGYAGTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.819637 0.005961 0.005961 0.168441
 0.005773 0.005961 0.005961 0.982305
 0.005773 0.005961 0.982493 0.005773
 0.005773 0.656633 0.005961 0.331633
 0.982305 0.005961 0.005961 0.005773
 0.005773 0.005961 0.982493 0.005773
 0.005773 0.168629 0.005961 0.819637
 0.005773 0.819825 0.005961 0.168441

MOTIF 5-CGGTCCCM STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.002281 0.928823 0.066616 0.002281
 0.002281 0.002355 0.837959 0.157405
 0.002281 0.130878 0.800300 0.066542
 0.002281 0.002355 0.066616 0.928748
 0.130803 0.736038 0.066616 0.066542
 0.002281 0.800300 0.195139 0.002281
 0.002281 0.736038 0.259400 0.002281
 0.350189 0.516652 0.002355 0.130803

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZBED1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZBED1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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