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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.181 C 0.319 G 0.319 T 0.181 

MOTIF 1-RTWAACAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.434889 0.212993 0.263389 0.088729
 0.002259 0.003978 0.039774 0.953988
 0.557155 0.090449 0.003978 0.348418
 0.903314 0.090449 0.003978 0.002259
 0.903314 0.090449 0.003978 0.002259
 0.002259 0.905033 0.090449 0.002259
 0.903314 0.090449 0.003978 0.002259
 0.088729 0.732092 0.090449 0.088729

MOTIF 2-CGGCGCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 7.0e-001
 0.001584 0.933435 0.063397 0.001584
 0.001584 0.063397 0.933435 0.001584
 0.062192 0.063397 0.872827 0.001584
 0.001584 0.690805 0.124201 0.183410
 0.062192 0.063397 0.840170 0.034240
 0.001584 0.892103 0.104729 0.001584
 0.001584 0.933435 0.002788 0.062192
 0.069544 0.865475 0.002788 0.062192

MOTIF 3-ACATGGCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 9.8e-001
 0.762368 0.001716 0.017160 0.218756
 0.185935 0.541614 0.256033 0.016418
 0.958286 0.001716 0.039023 0.000975
 0.000975 0.001716 0.065550 0.931759
 0.000975 0.001716 0.996334 0.000975
 0.000975 0.001716 0.996334 0.000975
 0.075588 0.816101 0.107337 0.000975
 0.000975 0.001716 0.885946 0.111363

MOTIF 4-CTGGAGGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.002616 0.990162 0.004606 0.002616
 0.203172 0.004606 0.205162 0.587060
 0.002616 0.046051 0.948717 0.002616
 0.102733 0.004606 0.890045 0.002616
 0.946727 0.004606 0.046051 0.002616
 0.002616 0.104723 0.890045 0.002616
 0.002616 0.004606 0.990162 0.002616
 0.002616 0.990162 0.004606 0.002616

MOTIF 5-CCTCGCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.003204 0.742274 0.251318 0.003204
 0.003204 0.987949 0.005642 0.003204
 0.003204 0.005642 0.005642 0.985511
 0.003204 0.987949 0.005642 0.003204
 0.003204 0.005642 0.742274 0.248880
 0.003204 0.987949 0.005642 0.003204
 0.003204 0.865309 0.128283 0.003204
 0.003204 0.742274 0.251318 0.003204

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/YY1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_YY1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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