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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.164 C 0.336 G 0.336 T 0.164 

MOTIF 1-CACGTGAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 76 P= 6.9e-002
 0.000521 0.997890 0.001068 0.000521
 0.972645 0.001068 0.001068 0.025219
 0.000521 0.852697 0.012936 0.133846
 0.022690 0.010186 0.966603 0.000521
 0.022547 0.001068 0.001068 0.975316
 0.000521 0.001068 0.997890 0.000521
 0.958266 0.040145 0.001068 0.000521
 0.000521 0.876988 0.012936 0.109555

MOTIF 2-CGCCCGCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.0e-001
 0.075309 0.919384 0.003567 0.001740
 0.001740 0.003567 0.992954 0.001740
 0.001740 0.992954 0.003567 0.001740
 0.001740 0.624159 0.150942 0.223159
 0.001740 0.845341 0.151180 0.001740
 0.001740 0.003567 0.992954 0.001740
 0.001740 0.845578 0.150942 0.001740
 0.001740 0.919384 0.077136 0.001740

MOTIF 3-CCCGCCTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.001640 0.854646 0.003363 0.140351
 0.070996 0.924001 0.003363 0.001640
 0.001640 0.993357 0.003363 0.001640
 0.030351 0.003363 0.964646 0.001640
 0.001640 0.895291 0.072719 0.030351
 0.210378 0.755909 0.032074 0.001640
 0.001640 0.142297 0.003363 0.852700
 0.030351 0.825935 0.003363 0.140351

MOTIF 4-CACATGGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.014900 0.939645 0.030555 0.014900
 0.923991 0.030555 0.030555 0.014900
 0.014900 0.939645 0.030555 0.014900
 0.923991 0.030555 0.030555 0.014900
 0.014900 0.030555 0.030555 0.923991
 0.014900 0.030555 0.939645 0.014900
 0.014900 0.030555 0.939645 0.014900
 0.923991 0.030555 0.030555 0.014900

MOTIF 5-GTAGATTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.014900 0.030555 0.939645 0.014900
 0.014900 0.030555 0.030555 0.923991
 0.923991 0.030555 0.030555 0.014900
 0.014900 0.030555 0.939645 0.014900
 0.923991 0.030555 0.030555 0.014900
 0.014900 0.030555 0.030555 0.923991
 0.014900 0.030555 0.030555 0.923991
 0.014900 0.030555 0.939645 0.014900

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/USF2.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_USF2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.97 seconds
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