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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.136 C 0.364 G 0.364 T 0.136 

MOTIF 1-TCACGTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 5.0e-001
 0.027122 0.272990 0.099807 0.600081
 0.000534 0.997502 0.001431 0.000534
 0.996605 0.001431 0.001431 0.000534
 0.006170 0.975646 0.015047 0.003138
 0.003138 0.015047 0.975646 0.006170
 0.000534 0.001431 0.001431 0.996605
 0.000534 0.001431 0.997502 0.000534
 0.600081 0.099807 0.272990 0.027122

MOTIF 2-CGTGACCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.002677 0.987469 0.007178 0.002677
 0.002677 0.007178 0.987469 0.002677
 0.139290 0.007178 0.007178 0.846353
 0.002677 0.007178 0.987469 0.002677
 0.982967 0.007178 0.007178 0.002677
 0.002677 0.987469 0.007178 0.002677
 0.002677 0.987469 0.007178 0.002677
 0.002677 0.987469 0.007178 0.002677

MOTIF 3-CCGGCGCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.001806 0.991545 0.004843 0.001806
 0.001806 0.991545 0.004843 0.001806
 0.001806 0.004843 0.991545 0.001806
 0.001806 0.004843 0.991545 0.001806
 0.093982 0.899369 0.004843 0.001806
 0.001806 0.004843 0.899369 0.093982
 0.186454 0.651862 0.159878 0.001806
 0.093982 0.004843 0.899369 0.001806

MOTIF 4-CTCCGCCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.001000 0.893257 0.053712 0.052031
 0.154586 0.258173 0.013985 0.573255
 0.001000 0.985558 0.012442 0.001000
 0.052031 0.944288 0.002681 0.001000
 0.103226 0.002681 0.893093 0.001000
 0.052031 0.944288 0.002681 0.001000
 0.001000 0.995319 0.002681 0.001000
 0.052031 0.893257 0.002681 0.052031

MOTIF 5-AGGTGGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.759998 0.099507 0.044104 0.096392
 0.001852 0.289501 0.706795 0.001852
 0.001852 0.004967 0.991328 0.001852
 0.001852 0.289501 0.004967 0.703680
 0.001852 0.004967 0.991328 0.001852
 0.001852 0.004967 0.991328 0.001852
 0.001852 0.004967 0.991328 0.001852
 0.001852 0.004967 0.896789 0.096392

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/USF1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_USF1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.55 seconds
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