********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.128 C 0.372 G 0.372 T 0.128 

MOTIF 1-GCGAGGCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.001091 0.003170 0.994648 0.001091
 0.001091 0.876318 0.003170 0.119421
 0.060161 0.130394 0.749284 0.060161
 0.992569 0.003170 0.003170 0.001091
 0.001091 0.062240 0.935578 0.001091
 0.060161 0.121500 0.817248 0.001091
 0.025544 0.958897 0.014468 0.001091
 0.001091 0.816867 0.180952 0.001091

MOTIF 2-CCCGGVCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.001320 0.993523 0.003837 0.001320
 0.144295 0.707343 0.147042 0.001320
 0.001320 0.993523 0.003837 0.001320
 0.001320 0.075324 0.922036 0.001320
 0.072808 0.033430 0.892442 0.001320
 0.358988 0.406130 0.233562 0.001320
 0.001320 0.993523 0.003837 0.001320
 0.001320 0.003837 0.993523 0.001320

MOTIF 3-CCAGGCMG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.001641 0.991949 0.004769 0.001641
 0.001641 0.991949 0.004769 0.001641
 0.774018 0.182784 0.041556 0.001641
 0.001641 0.004769 0.991949 0.001641
 0.001641 0.004769 0.991949 0.001641
 0.001641 0.991949 0.004769 0.001641
 0.483037 0.272223 0.154235 0.090506
 0.090506 0.093634 0.814219 0.001641

MOTIF 4-CCGCCTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.134194 0.856301 0.007071 0.002433
 0.002433 0.988062 0.007071 0.002433
 0.002433 0.007071 0.988062 0.002433
 0.002433 0.988062 0.007071 0.002433
 0.002433 0.668432 0.326701 0.002433
 0.002433 0.007071 0.007071 0.983424
 0.002433 0.988062 0.007071 0.002433
 0.002433 0.988062 0.007071 0.002433

MOTIF 5-CAGCTGCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.001519 0.910315 0.086648 0.001519
 0.742687 0.086648 0.169147 0.001519
 0.001519 0.004413 0.992549 0.001519
 0.001519 0.992549 0.004413 0.001519
 0.001519 0.251912 0.004413 0.742156
 0.083753 0.004413 0.910315 0.001519
 0.001519 0.992549 0.004413 0.001519
 0.165987 0.086648 0.004413 0.742952

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/UBTF.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_UBTF/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n04.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.59 seconds
********************************************************************************