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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.231 C 0.269 G 0.269 T 0.231 

MOTIF 1-GGCAGCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.2e-001
 0.002445 0.002857 0.918745 0.075953
 0.032875 0.126492 0.764680 0.075953
 0.002445 0.992252 0.002857 0.002445
 0.844826 0.002857 0.076364 0.075953
 0.002445 0.076364 0.918745 0.002445
 0.075953 0.918745 0.002857 0.002445
 0.918333 0.002857 0.002857 0.075953
 0.002445 0.126492 0.795109 0.075953

MOTIF 2-ATYATRTS STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.6e-001
 0.823675 0.086773 0.003246 0.086306
 0.002779 0.003246 0.003246 0.990728
 0.002779 0.504407 0.003246 0.489568
 0.656621 0.086773 0.170300 0.086306
 0.002779 0.086773 0.003246 0.907202
 0.503940 0.037824 0.420880 0.037356
 0.169832 0.003246 0.003246 0.823675
 0.169832 0.371931 0.288404 0.169832

MOTIF 3-ACTAGAKG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.991882 0.002842 0.002842 0.002433
 0.075567 0.888882 0.033118 0.002433
 0.125441 0.002842 0.002842 0.868874
 0.991882 0.002842 0.002842 0.002433
 0.075567 0.002842 0.919157 0.002433
 0.668599 0.149346 0.149346 0.032708
 0.002433 0.002842 0.419095 0.575629
 0.002433 0.002842 0.992291 0.002433

MOTIF 4-CACTGTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.003561 0.774285 0.004160 0.217993
 0.988118 0.004160 0.004160 0.003561
 0.110605 0.881673 0.004160 0.003561
 0.003561 0.004160 0.004160 0.988118
 0.003561 0.111204 0.881673 0.003561
 0.003561 0.218592 0.004160 0.773686
 0.003561 0.881673 0.111204 0.003561
 0.024035 0.861199 0.004160 0.110605

MOTIF 5-GCAGTACC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.004650 0.145216 0.845483 0.004650
 0.144433 0.845483 0.005433 0.004650
 0.844701 0.005433 0.005433 0.144433
 0.144433 0.005433 0.845483 0.004650
 0.004650 0.005433 0.005433 0.984484
 0.844701 0.145216 0.005433 0.004650
 0.004650 0.985266 0.005433 0.004650
 0.004650 0.845483 0.145216 0.004650

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/TRIM22.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_TRIM22/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.70 seconds
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