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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.288 C 0.212 G 0.212 T 0.288 

MOTIF 1-CACATCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 1.2e-001
 0.091740 0.789771 0.108668 0.009821
 0.997786 0.000659 0.000659 0.000896
 0.000896 0.902174 0.096033 0.000896
 0.794254 0.022219 0.000659 0.182868
 0.037159 0.000659 0.000659 0.961523
 0.000896 0.923687 0.052960 0.022456
 0.997786 0.000659 0.000659 0.000896
 0.932897 0.000659 0.065548 0.000896

MOTIF 2-TCAAAGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.003781 0.002781 0.093760 0.899677
 0.094760 0.898677 0.002781 0.003781
 0.990656 0.002781 0.002781 0.003781
 0.952994 0.040444 0.002781 0.003781
 0.990656 0.002781 0.002781 0.003781
 0.003781 0.093760 0.898677 0.003781
 0.952994 0.002781 0.040444 0.003781
 0.625860 0.002781 0.276598 0.094760

MOTIF 3-CAGCCAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.006765 0.981495 0.004975 0.006765
 0.983284 0.004975 0.004975 0.006765
 0.169518 0.004975 0.818742 0.006765
 0.169518 0.655989 0.004975 0.169518
 0.169518 0.655989 0.004975 0.169518
 0.983284 0.004975 0.004975 0.006765
 0.983284 0.004975 0.004975 0.006765
 0.983284 0.004975 0.004975 0.006765

MOTIF 4-CTAACCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003467 0.955985 0.002550 0.037998
 0.170565 0.002550 0.002550 0.824335
 0.539291 0.169648 0.120496 0.170565
 0.991433 0.002550 0.002550 0.003467
 0.003467 0.990516 0.002550 0.003467
 0.003467 0.990516 0.002550 0.003467
 0.908018 0.002550 0.085965 0.003467
 0.003467 0.823418 0.002550 0.170565

MOTIF 5-AAAGSAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.992696 0.002174 0.002174 0.002956
 0.708230 0.215523 0.002174 0.074072
 0.779118 0.215752 0.002174 0.002956
 0.074072 0.002174 0.920798 0.002956
 0.002956 0.357756 0.636332 0.002956
 0.963256 0.002174 0.031614 0.002956
 0.779347 0.144407 0.073290 0.002956
 0.251863 0.002174 0.743007 0.002956

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/TCF7.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_TCF7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.69 seconds
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