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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.237 C 0.263 G 0.263 T 0.237 

MOTIF 1-AGCAGCTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 1.2e-001
 0.841542 0.065971 0.014583 0.077904
 0.226584 0.017359 0.625877 0.130180
 0.033372 0.854134 0.001225 0.111269
 0.964178 0.033494 0.001225 0.001103
 0.033372 0.186006 0.779519 0.001103
 0.079103 0.583034 0.207683 0.130180
 0.001103 0.065763 0.033494 0.899640
 0.033372 0.001225 0.867493 0.097910

MOTIF 2-RTGACWVA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.520287 0.125612 0.351998 0.002103
 0.002103 0.002336 0.002336 0.993225
 0.002103 0.002336 0.993458 0.002103
 0.993225 0.002336 0.002336 0.002103
 0.002103 0.931919 0.063875 0.002103
 0.433273 0.002336 0.063875 0.500516
 0.248260 0.397441 0.352196 0.002103
 0.685332 0.310229 0.002336 0.002103

MOTIF 3-RAGTGGGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.631307 0.003971 0.361147 0.003576
 0.883860 0.108593 0.003971 0.003576
 0.003576 0.003971 0.884256 0.108198
 0.212819 0.003971 0.151903 0.631307
 0.003576 0.003971 0.884256 0.108198
 0.003576 0.003971 0.988877 0.003576
 0.003576 0.003971 0.988877 0.003576
 0.003576 0.108593 0.213215 0.674617

MOTIF 4-CAGCTGGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.021536 0.933009 0.023918 0.021536
 0.930627 0.023918 0.023918 0.021536
 0.021536 0.023918 0.933009 0.021536
 0.021536 0.933009 0.023918 0.021536
 0.021536 0.023918 0.023918 0.930627
 0.021536 0.023918 0.933009 0.021536
 0.021536 0.023918 0.933009 0.021536
 0.021536 0.023918 0.933009 0.021536

MOTIF 5-GGCCACAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.106767 0.003919 0.885786 0.003528
 0.059155 0.003919 0.933398 0.003528
 0.003528 0.782547 0.107157 0.106767
 0.003528 0.989024 0.003919 0.003528
 0.575348 0.210728 0.107157 0.106767
 0.003528 0.989024 0.003919 0.003528
 0.988634 0.003919 0.003919 0.003528
 0.106767 0.003919 0.885786 0.003528

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/TCF12.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_TCF12/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.69 seconds
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