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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.208 G 0.208 T 0.292 

MOTIF 1-AGGTGTTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.898754 0.049610 0.049610 0.002027
 0.166451 0.001447 0.733750 0.098351
 0.098351 0.001447 0.878237 0.021964
 0.002027 0.001447 0.049610 0.946916
 0.002027 0.097772 0.898174 0.002027
 0.146669 0.097772 0.001447 0.754112
 0.050189 0.097927 0.105686 0.746198
 0.995078 0.001447 0.001447 0.002027

MOTIF 2-GAAACCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.243369 0.077001 0.676484 0.003146
 0.917607 0.077001 0.002246 0.003146
 0.842852 0.002246 0.077001 0.077900
 0.992361 0.002246 0.002246 0.003146
 0.003146 0.991462 0.002246 0.003146
 0.003146 0.991462 0.002246 0.003146
 0.992361 0.002246 0.002246 0.003146
 0.228133 0.766475 0.002246 0.003146

MOTIF 3-CACTGACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.026518 0.928027 0.018936 0.026518
 0.935609 0.018936 0.018936 0.026518
 0.026518 0.928027 0.018936 0.026518
 0.026518 0.018936 0.018936 0.935609
 0.026518 0.018936 0.928027 0.026518
 0.935609 0.018936 0.018936 0.026518
 0.026518 0.928027 0.018936 0.026518
 0.935609 0.018936 0.018936 0.026518

MOTIF 4-AAGAAAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.935609 0.018936 0.018936 0.026518
 0.935609 0.018936 0.018936 0.026518
 0.026518 0.018936 0.928027 0.026518
 0.935609 0.018936 0.018936 0.026518
 0.935609 0.018936 0.018936 0.026518
 0.935609 0.018936 0.018936 0.026518
 0.935609 0.018936 0.018936 0.026518
 0.935609 0.018936 0.018936 0.026518

MOTIF 5-ACACTAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.935609 0.018936 0.018936 0.026518
 0.026518 0.928027 0.018936 0.026518
 0.935609 0.018936 0.018936 0.026518
 0.026518 0.928027 0.018936 0.026518
 0.026518 0.018936 0.018936 0.935609
 0.935609 0.018936 0.018936 0.026518
 0.026518 0.018936 0.928027 0.026518
 0.026518 0.018936 0.928027 0.026518

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/TBX21.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_TBX21/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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