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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.222 C 0.278 G 0.278 T 0.222 

MOTIF 1-TGCACCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.0e-001
 0.115271 0.002276 0.002276 0.880177
 0.138755 0.049243 0.593036 0.218966
 0.001816 0.800425 0.115731 0.082027
 0.823449 0.002276 0.172459 0.001816
 0.195483 0.640003 0.059004 0.105511
 0.001816 0.937364 0.002276 0.058544
 0.001816 0.913881 0.002276 0.082027
 0.880177 0.002276 0.002276 0.115271

MOTIF 2-AACCACRC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.984308 0.005608 0.005608 0.004475
 0.984308 0.005608 0.005608 0.004475
 0.004475 0.845659 0.005608 0.144258
 0.004475 0.985442 0.005608 0.004475
 0.844525 0.005608 0.145391 0.004475
 0.144258 0.845659 0.005608 0.004475
 0.425176 0.005608 0.564741 0.004475
 0.144258 0.705876 0.145391 0.004475

MOTIF 3-ATGTGAGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.929264 0.025282 0.025282 0.020173
 0.020173 0.025282 0.025282 0.929264
 0.020173 0.025282 0.934373 0.020173
 0.020173 0.025282 0.025282 0.929264
 0.020173 0.025282 0.934373 0.020173
 0.929264 0.025282 0.025282 0.020173
 0.020173 0.025282 0.934373 0.020173
 0.020173 0.025282 0.025282 0.929264

MOTIF 4-CSCACAGM STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.002548 0.991711 0.003193 0.002548
 0.002548 0.593514 0.401390 0.002548
 0.002548 0.832535 0.162370 0.002548
 0.991066 0.003193 0.003193 0.002548
 0.082136 0.832535 0.003193 0.082136
 0.798942 0.003193 0.162370 0.035495
 0.002548 0.003193 0.991711 0.002548
 0.593125 0.401134 0.003193 0.002548

MOTIF 5-AGAATGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.929264 0.025282 0.025282 0.020173
 0.020173 0.025282 0.934373 0.020173
 0.929264 0.025282 0.025282 0.020173
 0.929264 0.025282 0.025282 0.020173
 0.020173 0.025282 0.025282 0.929264
 0.020173 0.025282 0.934373 0.020173
 0.929264 0.025282 0.025282 0.020173
 0.929264 0.025282 0.025282 0.020173

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/TARDBP.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_TARDBP/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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