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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.283 C 0.216 G 0.216 T 0.283 

MOTIF 1-CTGGAAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 7.6e-001
 0.004028 0.988868 0.003076 0.004028
 0.102512 0.003076 0.200044 0.694368
 0.102512 0.003076 0.791900 0.102512
 0.004028 0.101560 0.890384 0.004028
 0.891336 0.003076 0.101560 0.004028
 0.891336 0.003076 0.101560 0.004028
 0.792852 0.003076 0.003076 0.200996
 0.004028 0.692464 0.003076 0.300432

MOTIF 2-ACAACTCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.820423 0.167837 0.005083 0.006657
 0.006657 0.981603 0.005083 0.006657
 0.983176 0.005083 0.005083 0.006657
 0.820423 0.167837 0.005083 0.006657
 0.006657 0.981603 0.005083 0.006657
 0.169410 0.005083 0.005083 0.820423
 0.006657 0.981603 0.005083 0.006657
 0.169410 0.167837 0.167837 0.494917

MOTIF 3-AAGCAAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.772560 0.002822 0.093172 0.131447
 0.809961 0.183521 0.002822 0.003695
 0.094045 0.002822 0.899438 0.003695
 0.003695 0.862036 0.093172 0.041097
 0.772560 0.093172 0.040224 0.094045
 0.862909 0.002822 0.040224 0.094045
 0.003695 0.245135 0.657125 0.094045
 0.953259 0.040224 0.002822 0.003695

MOTIF 4-ACTGAAAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.983185 0.005081 0.005081 0.006653
 0.169321 0.818945 0.005081 0.006653
 0.006653 0.005081 0.005081 0.983185
 0.006653 0.005081 0.981613 0.006653
 0.983185 0.005081 0.005081 0.006653
 0.657849 0.167749 0.005081 0.169321
 0.820517 0.005081 0.005081 0.169321
 0.006653 0.981613 0.005081 0.006653

MOTIF 5-GACCACGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.007951 0.006072 0.978027 0.007951
 0.979906 0.006072 0.006072 0.007951
 0.007951 0.978027 0.006072 0.007951
 0.007951 0.589245 0.200463 0.202342
 0.785515 0.200463 0.006072 0.007951
 0.007951 0.783636 0.200463 0.007951
 0.007951 0.006072 0.783636 0.202342
 0.007951 0.006072 0.006072 0.979906

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/STAT3.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_STAT3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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