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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.16 C 0.34 G 0.34 T 0.16 

MOTIF 1-AGCGCCGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 2.4e-001
 0.985188 0.005999 0.005999 0.002813
 0.002813 0.056571 0.937803 0.002813
 0.002813 0.988375 0.005999 0.002813
 0.002813 0.005999 0.866211 0.124977
 0.002813 0.866211 0.128164 0.002813
 0.002813 0.988375 0.005999 0.002813
 0.124977 0.056571 0.815639 0.002813
 0.002813 0.866211 0.005999 0.124977

MOTIF 2-GCAGCCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.246842 0.004006 0.747274 0.001878
 0.001878 0.665180 0.331063 0.001878
 0.826976 0.085573 0.085573 0.001878
 0.001878 0.004006 0.992238 0.001878
 0.001878 0.946508 0.049736 0.001878
 0.001878 0.992238 0.004006 0.001878
 0.001878 0.330537 0.004006 0.663579
 0.001878 0.004006 0.992238 0.001878

MOTIF 3-CAGGAAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.014509 0.940036 0.030945 0.014509
 0.923600 0.030945 0.030945 0.014509
 0.014509 0.030945 0.940036 0.014509
 0.014509 0.030945 0.940036 0.014509
 0.923600 0.030945 0.030945 0.014509
 0.923600 0.030945 0.030945 0.014509
 0.923600 0.030945 0.030945 0.014509
 0.014509 0.940036 0.030945 0.014509

MOTIF 4-CGYCCCCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.002823 0.988334 0.006020 0.002823
 0.002823 0.006020 0.865742 0.125414
 0.002823 0.374981 0.128612 0.493584
 0.002823 0.988334 0.006020 0.002823
 0.002823 0.988334 0.006020 0.002823
 0.002823 0.988334 0.006020 0.002823
 0.002823 0.988334 0.006020 0.002823
 0.862545 0.006020 0.128612 0.002823

MOTIF 5-ACCTGGAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.636322 0.002732 0.137000 0.223946
 0.001281 0.939085 0.002732 0.056902
 0.001281 0.804817 0.002732 0.191171
 0.001281 0.081379 0.225397 0.691944
 0.056902 0.002732 0.772221 0.168145
 0.001281 0.002732 0.994707 0.001281
 0.636501 0.058353 0.137000 0.168145
 0.001281 0.002732 0.994707 0.001281

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/STAT1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_STAT1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.98 seconds
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