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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.275 C 0.225 G 0.225 T 0.275 

MOTIF 1-GGAAGTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 3.3e-001
 0.119966 0.000771 0.878323 0.000939
 0.000939 0.000771 0.997350 0.000939
 0.997518 0.000771 0.000771 0.000939
 0.950092 0.024485 0.024485 0.000939
 0.000939 0.184517 0.813604 0.000939
 0.000939 0.000771 0.000771 0.997518
 0.000939 0.024485 0.973637 0.000939
 0.727628 0.082009 0.165711 0.024653

MOTIF 2-AKSTGGKT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.811145 0.002918 0.182382 0.003555
 0.003555 0.002918 0.361847 0.631680
 0.003555 0.361847 0.451579 0.183019
 0.003555 0.002918 0.002918 0.990609
 0.093287 0.002918 0.900240 0.003555
 0.003555 0.002918 0.989972 0.003555
 0.093287 0.002918 0.361847 0.541948
 0.003555 0.002918 0.002918 0.990609

MOTIF 3-ATTTSAGD STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.818112 0.002810 0.002810 0.176268
 0.003424 0.002810 0.002810 0.990956
 0.003424 0.002810 0.002810 0.990956
 0.089846 0.002810 0.002810 0.904534
 0.003424 0.348776 0.644376 0.003424
 0.955180 0.002810 0.002810 0.039200
 0.003424 0.002810 0.990342 0.003424
 0.471588 0.002810 0.262912 0.262690

MOTIF 4-AGAAAGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.864686 0.003983 0.003983 0.127347
 0.004853 0.003983 0.863817 0.127347
 0.987181 0.003983 0.003983 0.004853
 0.864686 0.126477 0.003983 0.004853
 0.987181 0.003983 0.003983 0.004853
 0.004853 0.003983 0.986311 0.004853
 0.864686 0.003983 0.126477 0.004853
 0.004853 0.003983 0.986311 0.004853

MOTIF 5-CAGAAAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.024964 0.929582 0.020491 0.024964
 0.934055 0.020491 0.020491 0.024964
 0.024964 0.020491 0.929582 0.024964
 0.934055 0.020491 0.020491 0.024964
 0.934055 0.020491 0.020491 0.024964
 0.934055 0.020491 0.020491 0.024964
 0.024964 0.020491 0.929582 0.024964
 0.024964 0.020491 0.929582 0.024964

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/SPI1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_SPI1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.65 seconds
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