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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.201 C 0.299 G 0.299 T 0.201 

MOTIF 1-CCGACCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.003384 0.988191 0.005042 0.003384
 0.120186 0.637783 0.121844 0.120186
 0.003384 0.005042 0.988191 0.003384
 0.635749 0.239023 0.005042 0.120186
 0.003384 0.871388 0.121844 0.003384
 0.003384 0.988191 0.005042 0.003384
 0.938180 0.005042 0.053394 0.003384
 0.986533 0.005042 0.005042 0.003384

MOTIF 2-AGCCAATC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 8.3e-001
 0.710088 0.104184 0.123586 0.062142
 0.062142 0.123586 0.812522 0.001750
 0.001750 0.993894 0.002607 0.001750
 0.001750 0.993894 0.002607 0.001750
 0.993037 0.002607 0.002607 0.001750
 0.993037 0.002607 0.002607 0.001750
 0.001750 0.062999 0.002607 0.932644
 0.062142 0.739430 0.196678 0.001750

MOTIF 3-GGAGGCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.092305 0.003872 0.811518 0.092305
 0.002599 0.273280 0.631816 0.092305
 0.899951 0.003872 0.093579 0.002599
 0.182011 0.183573 0.631816 0.002599
 0.002599 0.093579 0.901224 0.002599
 0.002599 0.901224 0.093579 0.002599
 0.002599 0.990930 0.003872 0.002599
 0.002599 0.990930 0.003872 0.002599

MOTIF 4-AGGAGACG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.890126 0.004252 0.004252 0.101369
 0.002854 0.004252 0.990040 0.002854
 0.101369 0.102768 0.793009 0.002854
 0.890126 0.004252 0.102768 0.002854
 0.002854 0.201283 0.694494 0.101369
 0.791294 0.004252 0.201600 0.002854
 0.101369 0.891524 0.004252 0.002854
 0.002854 0.201600 0.792692 0.002854

MOTIF 5-AACGACSA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.981235 0.007025 0.007025 0.004715
 0.981235 0.007025 0.007025 0.004715
 0.004715 0.820792 0.169779 0.004715
 0.004715 0.007025 0.983545 0.004715
 0.655728 0.007025 0.169779 0.167468
 0.004715 0.983545 0.007025 0.004715
 0.004715 0.658038 0.332532 0.004715
 0.655728 0.169779 0.169779 0.004715

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/SP1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_SP1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.76 seconds
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