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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.189 C 0.311 G 0.311 T 0.189 

MOTIF 1-AGRKGGCR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 106 P= 1.6e-002
 0.997120 0.001103 0.001103 0.000673
 0.000673 0.001103 0.997551 0.000673
 0.608562 0.001103 0.389662 0.000673
 0.000673 0.001103 0.457027 0.541196
 0.000673 0.001103 0.997551 0.000673
 0.000673 0.001103 0.972927 0.025296
 0.158925 0.839299 0.001103 0.000673
 0.411490 0.001103 0.586733 0.000673

MOTIF 2-CTGTCCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 6.4e-001
 0.126141 0.742216 0.005502 0.126141
 0.126141 0.128288 0.005502 0.740069
 0.003355 0.005502 0.987788 0.003355
 0.003355 0.005502 0.005502 0.985641
 0.003355 0.987788 0.005502 0.003355
 0.248927 0.742216 0.005502 0.003355
 0.740069 0.128288 0.005502 0.126141
 0.003355 0.865002 0.128288 0.003355

MOTIF 3-AACCAAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.788170 0.095599 0.095599 0.020631
 0.741418 0.142351 0.068201 0.048030
 0.048030 0.722882 0.087555 0.141534
 0.094782 0.621182 0.048847 0.235189
 0.713869 0.095599 0.189254 0.001277
 0.834922 0.048847 0.021449 0.094782
 0.001277 0.048847 0.667935 0.281941
 0.048030 0.255210 0.648731 0.048030

MOTIF 4-ACAATACT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.869489 0.005236 0.122082 0.003193
 0.003193 0.988379 0.005236 0.003193
 0.752642 0.122082 0.005236 0.120039
 0.869489 0.005236 0.122082 0.003193
 0.003193 0.053606 0.005236 0.937965
 0.986335 0.005236 0.005236 0.003193
 0.236886 0.520993 0.122082 0.120039
 0.120039 0.005236 0.238929 0.635796

MOTIF 5-CTAAACAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.017218 0.937327 0.028236 0.017218
 0.017218 0.028236 0.028236 0.926309
 0.926309 0.028236 0.028236 0.017218
 0.926309 0.028236 0.028236 0.017218
 0.926309 0.028236 0.028236 0.017218
 0.017218 0.937327 0.028236 0.017218
 0.926309 0.028236 0.028236 0.017218
 0.017218 0.028236 0.937327 0.017218

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/SMC3.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_SMC3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.61 seconds
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