********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-GSTAGACT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.004443 0.003727 0.987387 0.004443
 0.004443 0.533993 0.457122 0.004443
 0.004443 0.003727 0.230242 0.761588
 0.988103 0.003727 0.003727 0.004443
 0.004443 0.003727 0.987387 0.004443
 0.874846 0.116985 0.003727 0.004443
 0.004443 0.987387 0.003727 0.004443
 0.194936 0.116985 0.003727 0.684352

MOTIF 2-AACTGAGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.705168 0.004602 0.284745 0.005486
 0.845464 0.004602 0.144448 0.005486
 0.005486 0.984426 0.004602 0.005486
 0.005486 0.004602 0.004602 0.985310
 0.005486 0.004602 0.984426 0.005486
 0.845464 0.004602 0.004602 0.145332
 0.005486 0.004602 0.984426 0.005486
 0.285628 0.004602 0.704284 0.005486

MOTIF 3-ATGGGCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.982913 0.005353 0.005353 0.006381
 0.006381 0.005353 0.005353 0.982913
 0.006381 0.005353 0.981885 0.006381
 0.006381 0.005353 0.981885 0.006381
 0.169049 0.005353 0.819217 0.006381
 0.169049 0.656549 0.168021 0.006381
 0.820245 0.005353 0.168021 0.006381
 0.006381 0.005353 0.981885 0.006381

MOTIF 4-GAAAGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003863 0.101725 0.890549 0.003863
 0.891171 0.101725 0.003241 0.003863
 0.989655 0.003241 0.003241 0.003863
 0.989655 0.003241 0.003241 0.003863
 0.003863 0.003241 0.890549 0.102347
 0.792687 0.101725 0.101725 0.003863
 0.792687 0.101725 0.003241 0.102347
 0.989655 0.003241 0.003241 0.003863

MOTIF 5-AACCACAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.777923 0.145396 0.073875 0.002806
 0.920966 0.073875 0.002354 0.002806
 0.074327 0.920514 0.002354 0.002806
 0.002806 0.992035 0.002354 0.002806
 0.861751 0.031961 0.073875 0.032413
 0.002806 0.992035 0.002354 0.002806
 0.819607 0.002354 0.031961 0.146078
 0.706172 0.073875 0.145626 0.074327

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/SKIL.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_SKIL/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.69 seconds
********************************************************************************