********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.186 C 0.314 G 0.314 T 0.186 

MOTIF 1-RAGAACTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.480257 0.003601 0.355150 0.160992
 0.752375 0.241895 0.003601 0.002129
 0.002129 0.003601 0.992141 0.002129
 0.752375 0.003601 0.241895 0.002129
 0.990670 0.003601 0.003601 0.002129
 0.002129 0.992141 0.003601 0.002129
 0.002129 0.083032 0.003601 0.911238
 0.990670 0.003601 0.003601 0.002129

MOTIF 2-GCAGCAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 5.0e-001
 0.016891 0.028564 0.937655 0.016891
 0.016891 0.937655 0.028564 0.016891
 0.925982 0.028564 0.028564 0.016891
 0.016891 0.028564 0.937655 0.016891
 0.016891 0.937655 0.028564 0.016891
 0.925982 0.028564 0.028564 0.016891
 0.925982 0.028564 0.028564 0.016891
 0.016891 0.028564 0.937655 0.016891

MOTIF 3-CCAGGCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.6e-001
 0.016891 0.937655 0.028564 0.016891
 0.016891 0.937655 0.028564 0.016891
 0.925982 0.028564 0.028564 0.016891
 0.016891 0.028564 0.937655 0.016891
 0.016891 0.028564 0.937655 0.016891
 0.016891 0.937655 0.028564 0.016891
 0.925982 0.028564 0.028564 0.016891
 0.016891 0.028564 0.937655 0.016891

MOTIF 4-KCTGGGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.071385 0.016449 0.560443 0.351723
 0.001864 0.923600 0.003151 0.071385
 0.001864 0.003151 0.003151 0.991834
 0.001864 0.003151 0.993122 0.001864
 0.001864 0.003151 0.993122 0.001864
 0.001864 0.003151 0.993122 0.001864
 0.991834 0.003151 0.003151 0.001864
 0.643330 0.142418 0.003151 0.211101

MOTIF 5-AAGCCCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.802415 0.066185 0.129703 0.001697
 0.599158 0.066185 0.206331 0.128326
 0.065012 0.029080 0.851791 0.054117
 0.001697 0.803792 0.066185 0.128326
 0.065012 0.854996 0.066185 0.013807
 0.001697 0.777582 0.129499 0.091222
 0.001697 0.878001 0.092395 0.027907
 0.001697 0.002870 0.993736 0.001697

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/SIX5.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_SIX5/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n04.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.68 seconds
********************************************************************************