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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.181 C 0.319 G 0.319 T 0.181 

MOTIF 1-GCCACAGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.001690 0.002989 0.993630 0.001690
 0.001690 0.863879 0.002989 0.131441
 0.028547 0.966774 0.002989 0.001690
 0.862371 0.132949 0.002989 0.001690
 0.001690 0.837023 0.132741 0.028547
 0.640119 0.160366 0.002989 0.196526
 0.001690 0.132741 0.863879 0.001690
 0.001690 0.993630 0.002989 0.001690

MOTIF 2-AGAGGCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.983461 0.006447 0.006447 0.003645
 0.143555 0.006447 0.846353 0.003645
 0.983461 0.006447 0.006447 0.003645
 0.003645 0.006447 0.986262 0.003645
 0.003645 0.146356 0.846353 0.003645
 0.003645 0.846353 0.006447 0.143555
 0.143555 0.006447 0.146356 0.703642
 0.003645 0.006447 0.986262 0.003645

MOTIF 3-AGGAGCGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.925509 0.029036 0.029036 0.016418
 0.016418 0.029036 0.938127 0.016418
 0.016418 0.029036 0.938127 0.016418
 0.925509 0.029036 0.029036 0.016418
 0.016418 0.029036 0.938127 0.016418
 0.016418 0.938127 0.029036 0.016418
 0.016418 0.029036 0.938127 0.016418
 0.016418 0.938127 0.029036 0.016418

MOTIF 4-CACCCGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.001928 0.918738 0.077406 0.001928
 0.846755 0.034042 0.077406 0.041798
 0.001928 0.844742 0.003410 0.149920
 0.075924 0.770746 0.077406 0.075924
 0.001928 0.918738 0.077406 0.001928
 0.075924 0.034042 0.740114 0.149920
 0.812629 0.108038 0.077406 0.001928
 0.075924 0.077406 0.844742 0.001928

MOTIF 5-ASGTGGDG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.988350 0.004541 0.004541 0.002568
 0.002568 0.300181 0.596137 0.101114
 0.002568 0.004541 0.990324 0.002568
 0.002568 0.004541 0.004541 0.988350
 0.002568 0.004541 0.990324 0.002568
 0.002568 0.004541 0.891777 0.101114
 0.397071 0.103088 0.300181 0.199661
 0.002568 0.004541 0.891777 0.101114

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/SIN3A.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_SIN3A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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