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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.251 C 0.249 G 0.249 T 0.251 

MOTIF 1-AGCAACAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 81 P= 2.3e-001
 0.687946 0.000651 0.310748 0.000655
 0.000655 0.000651 0.961817 0.036876
 0.251205 0.514932 0.000651 0.233212
 0.856214 0.000651 0.070036 0.073098
 0.925599 0.000651 0.073094 0.000655
 0.000655 0.979928 0.018762 0.000655
 0.643172 0.044370 0.091263 0.221194
 0.119306 0.142421 0.697933 0.040340

MOTIF 2-GATGTCAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.0e-001
 0.002237 0.002224 0.683890 0.311649
 0.745547 0.002224 0.002224 0.250005
 0.002237 0.187752 0.064067 0.745944
 0.002237 0.002224 0.931460 0.064079
 0.002237 0.002224 0.064067 0.931472
 0.125922 0.869617 0.002224 0.002237
 0.931472 0.002224 0.064067 0.002237
 0.002237 0.002224 0.002224 0.993315

MOTIF 3-AACCAATC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 8.8e-001
 0.931882 0.022664 0.022664 0.022791
 0.931882 0.022664 0.022664 0.022791
 0.022791 0.931755 0.022664 0.022791
 0.022791 0.931755 0.022664 0.022791
 0.931882 0.022664 0.022664 0.022791
 0.931882 0.022664 0.022664 0.022791
 0.022791 0.022664 0.022664 0.931882
 0.022791 0.931755 0.022664 0.022791

MOTIF 4-GAAATGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.127176 0.004414 0.863970 0.004439
 0.986732 0.004414 0.004414 0.004439
 0.863995 0.004414 0.004414 0.127176
 0.863995 0.004414 0.127152 0.004439
 0.004439 0.004414 0.127152 0.863995
 0.249914 0.004414 0.741233 0.004439
 0.127176 0.618495 0.249889 0.004439
 0.986732 0.004414 0.004414 0.004439

MOTIF 5-ATGACKCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.693220 0.152042 0.152042 0.002697
 0.002697 0.108107 0.077242 0.811954
 0.077257 0.002682 0.917365 0.002697
 0.991940 0.002682 0.002682 0.002697
 0.002697 0.855634 0.108107 0.033562
 0.077257 0.002682 0.586813 0.333248
 0.002697 0.991925 0.002682 0.002697
 0.811714 0.002682 0.182907 0.002697

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/RFX5.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_RFX5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.07 seconds
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