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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.189 C 0.311 G 0.311 T 0.189 

MOTIF 1-GGTGCTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 77 P= 9.5e-002
 0.000797 0.001309 0.997098 0.000797
 0.000797 0.001309 0.997098 0.000797
 0.000797 0.001309 0.001309 0.996586
 0.029979 0.114534 0.737394 0.118093
 0.000797 0.997098 0.001309 0.000797
 0.000797 0.001309 0.001309 0.996586
 0.000797 0.001309 0.997098 0.000797
 0.996586 0.001309 0.001309 0.000797

MOTIF 2-ACAGCGSC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 2.4e-001
 0.841921 0.003348 0.152693 0.002038
 0.076711 0.917903 0.003348 0.002038
 0.767248 0.003348 0.227365 0.002038
 0.002038 0.003348 0.992575 0.002038
 0.002038 0.992575 0.003348 0.002038
 0.002038 0.003348 0.992575 0.002038
 0.002038 0.469628 0.451623 0.076711
 0.002038 0.812319 0.003348 0.182295

MOTIF 3-ATGGACAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 116 P= 3.8e-001
 0.789831 0.062873 0.015731 0.131565
 0.183805 0.193074 0.063216 0.559905
 0.015467 0.000675 0.983447 0.000411
 0.000411 0.000675 0.998503 0.000411
 0.922957 0.045844 0.030788 0.000411
 0.000411 0.912954 0.030788 0.055847
 0.998239 0.000675 0.000675 0.000411
 0.003291 0.000675 0.995623 0.000411

MOTIF 4-CKCCCMGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.001743 0.993649 0.002864 0.001743
 0.001743 0.130715 0.386110 0.481432
 0.001743 0.993649 0.002864 0.001743
 0.001743 0.993649 0.002864 0.001743
 0.092060 0.749040 0.157157 0.001743
 0.417557 0.386212 0.130613 0.065618
 0.193366 0.002864 0.802026 0.001743
 0.065618 0.674278 0.002864 0.257241

MOTIF 5-GTGCTGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.017200 0.028255 0.937345 0.017200
 0.017200 0.028255 0.028255 0.926291
 0.017200 0.028255 0.937345 0.017200
 0.017200 0.937345 0.028255 0.017200
 0.017200 0.028255 0.028255 0.926291
 0.017200 0.028255 0.937345 0.017200
 0.017200 0.028255 0.937345 0.017200
 0.926291 0.028255 0.028255 0.017200

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/REST.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_REST/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.54 seconds
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