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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.256 C 0.244 G 0.244 T 0.256 

MOTIF 1-ACSAGACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 5.0e-001
 0.986826 0.004321 0.004321 0.004533
 0.004533 0.863876 0.004321 0.127270
 0.004533 0.618402 0.372532 0.004533
 0.986826 0.004321 0.004321 0.004533
 0.004533 0.250190 0.740744 0.004533
 0.864089 0.004321 0.004321 0.127270
 0.127270 0.618402 0.127058 0.127270
 0.986826 0.004321 0.004321 0.004533

MOTIF 2-AAATCCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.932364 0.022182 0.022182 0.023273
 0.932364 0.022182 0.022182 0.023273
 0.932364 0.022182 0.022182 0.023273
 0.023273 0.022182 0.022182 0.932364
 0.023273 0.931273 0.022182 0.023273
 0.023273 0.931273 0.022182 0.023273
 0.023273 0.931273 0.022182 0.023273
 0.023273 0.931273 0.022182 0.023273

MOTIF 3-AACCCAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 8.8e-001
 0.946541 0.002012 0.002012 0.049435
 0.913043 0.025674 0.002012 0.059270
 0.002111 0.936606 0.002012 0.059270
 0.059270 0.822288 0.059171 0.059270
 0.002111 0.626595 0.059171 0.312122
 0.707515 0.002012 0.059171 0.231301
 0.155409 0.059171 0.783308 0.002111
 0.059270 0.025674 0.912944 0.002111

MOTIF 4-CTACACAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.023273 0.931273 0.022182 0.023273
 0.023273 0.022182 0.022182 0.932364
 0.932364 0.022182 0.022182 0.023273
 0.023273 0.931273 0.022182 0.023273
 0.932364 0.022182 0.022182 0.023273
 0.023273 0.931273 0.022182 0.023273
 0.932364 0.022182 0.022182 0.023273
 0.023273 0.022182 0.022182 0.932364

MOTIF 5-TCAKMTGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.164508 0.004655 0.137118 0.693719
 0.004884 0.825953 0.164279 0.004884
 0.853555 0.004655 0.070780 0.071009
 0.004884 0.004655 0.522489 0.467971
 0.467971 0.522489 0.004655 0.004884
 0.071009 0.070780 0.004655 0.853555
 0.004884 0.164279 0.825953 0.004884
 0.693719 0.137118 0.004655 0.164508

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/RELA.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_RELA/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.97 seconds
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