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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.221 C 0.279 G 0.279 T 0.221 

MOTIF 1-GGAGAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.025044 0.002260 0.970904 0.001792
 0.001792 0.114779 0.881637 0.001792
 0.834845 0.081681 0.002260 0.081213
 0.057961 0.137851 0.802397 0.001792
 0.778676 0.081681 0.058429 0.081213
 0.712662 0.170948 0.114598 0.001792
 0.745759 0.025512 0.114598 0.114130
 0.712842 0.114598 0.170768 0.001792

MOTIF 2-CCMACGMC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.005189 0.983077 0.006545 0.005189
 0.005189 0.820409 0.169213 0.005189
 0.330525 0.495073 0.169213 0.005189
 0.981721 0.006545 0.006545 0.005189
 0.005189 0.983077 0.006545 0.005189
 0.005189 0.006545 0.983077 0.005189
 0.330525 0.657741 0.006545 0.005189
 0.005189 0.983077 0.006545 0.005189

MOTIF 3-AGGAAGGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.929191 0.025355 0.025355 0.020100
 0.020100 0.025355 0.934445 0.020100
 0.020100 0.025355 0.934445 0.020100
 0.929191 0.025355 0.025355 0.020100
 0.929191 0.025355 0.025355 0.020100
 0.020100 0.025355 0.934445 0.020100
 0.020100 0.025355 0.934445 0.020100
 0.020100 0.025355 0.934445 0.020100

MOTIF 4-CCCCGGCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.002906 0.899409 0.094779 0.002906
 0.094019 0.717183 0.094779 0.094019
 0.094019 0.717183 0.094779 0.094019
 0.094019 0.861691 0.041384 0.002906
 0.002906 0.003666 0.808003 0.185425
 0.094019 0.003666 0.861691 0.040624
 0.002906 0.990521 0.003666 0.002906
 0.002906 0.003666 0.041384 0.952044

MOTIF 5-GATCCGCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.127202 0.091037 0.717162 0.064599
 0.841845 0.002519 0.065121 0.090515
 0.001997 0.190326 0.002519 0.805158
 0.064599 0.805680 0.127724 0.001997
 0.127202 0.805579 0.065222 0.001997
 0.064599 0.065121 0.617872 0.252407
 0.001997 0.868182 0.065222 0.064599
 0.001997 0.842367 0.028434 0.127202

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/RBBP5.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_RBBP5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.76 seconds
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