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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.216 C 0.283 G 0.283 T 0.216 

MOTIF 1-AGTGACAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 5.0e-001
 0.783771 0.007946 0.202215 0.006068
 0.006068 0.202215 0.785649 0.006068
 0.006068 0.007946 0.007946 0.978041
 0.006068 0.007946 0.785649 0.200337
 0.978041 0.007946 0.007946 0.006068
 0.006068 0.979919 0.007946 0.006068
 0.978041 0.007946 0.007946 0.006068
 0.006068 0.007946 0.007946 0.978041

MOTIF 2-CACCAGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 7.7e-001
 0.012507 0.901188 0.029242 0.057063
 0.968732 0.001149 0.029242 0.000877
 0.141613 0.665402 0.079737 0.113248
 0.085246 0.767944 0.057334 0.089476
 0.912546 0.029242 0.029242 0.028970
 0.044107 0.085518 0.829776 0.040600
 0.810641 0.057334 0.119518 0.012507
 0.003457 0.057334 0.769684 0.169524

MOTIF 3-GGGCGCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.019682 0.025773 0.934864 0.019682
 0.019682 0.025773 0.934864 0.019682
 0.019682 0.025773 0.934864 0.019682
 0.019682 0.934864 0.025773 0.019682
 0.019682 0.025773 0.934864 0.019682
 0.019682 0.934864 0.025773 0.019682
 0.019682 0.934864 0.025773 0.019682
 0.019682 0.934864 0.025773 0.019682

MOTIF 4-CCACCTAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.019682 0.934864 0.025773 0.019682
 0.019682 0.934864 0.025773 0.019682
 0.928773 0.025773 0.025773 0.019682
 0.019682 0.934864 0.025773 0.019682
 0.019682 0.934864 0.025773 0.019682
 0.019682 0.025773 0.025773 0.928773
 0.928773 0.025773 0.025773 0.019682
 0.019682 0.025773 0.934864 0.019682

MOTIF 5-ACCTGAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.875946 0.004559 0.004559 0.114937
 0.003481 0.988479 0.004559 0.003481
 0.114937 0.654113 0.116014 0.114937
 0.049620 0.004559 0.004559 0.941263
 0.003481 0.004559 0.988479 0.003481
 0.875946 0.004559 0.116014 0.003481
 0.049620 0.004559 0.830885 0.114937
 0.003481 0.227469 0.765568 0.003481

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/RAD21.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_RAD21/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.73 seconds
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