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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.188 C 0.312 G 0.312 T 0.188 

MOTIF 1-WGASTGAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 64 P= 6.3e-001
 0.404422 0.001066 0.024777 0.569735
 0.000644 0.001066 0.997645 0.000644
 0.997224 0.001066 0.001066 0.000644
 0.000644 0.286904 0.554505 0.157946
 0.000644 0.048565 0.272472 0.678319
 0.000644 0.001066 0.997645 0.000644
 0.854498 0.001066 0.143792 0.000644
 0.071778 0.926512 0.001066 0.000644

MOTIF 2-AGGCAGGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.6e-001
 0.960338 0.034275 0.003357 0.002030
 0.002030 0.003357 0.917897 0.076716
 0.076716 0.108961 0.737607 0.076716
 0.151402 0.812293 0.003357 0.032948
 0.736279 0.003357 0.227416 0.032948
 0.002030 0.078043 0.843211 0.076716
 0.076716 0.152730 0.768524 0.002030
 0.002030 0.152970 0.078043 0.766957

MOTIF 3-CCTCCCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.102938 0.848348 0.004505 0.044209
 0.002724 0.990047 0.004505 0.002724
 0.002724 0.004505 0.004505 0.988266
 0.102938 0.689083 0.205256 0.002724
 0.102938 0.848348 0.004505 0.044209
 0.002724 0.789619 0.204933 0.002724
 0.102938 0.789619 0.104719 0.002724
 0.988266 0.004505 0.004505 0.002724

MOTIF 4-ATTGGCYG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.876047 0.002199 0.120425 0.001329
 0.001329 0.002199 0.002199 0.994273
 0.001329 0.002199 0.002199 0.994273
 0.001329 0.002199 0.995142 0.001329
 0.001329 0.002199 0.995142 0.001329
 0.001329 0.750432 0.002199 0.246040
 0.001329 0.346954 0.002199 0.649518
 0.001329 0.198789 0.651663 0.148219

MOTIF 5-GCCGCTCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.003620 0.005987 0.853584 0.136809
 0.003620 0.986772 0.005987 0.003620
 0.003620 0.986772 0.005987 0.003620
 0.136809 0.139176 0.720396 0.003620
 0.003620 0.853584 0.005987 0.136809
 0.003620 0.230003 0.005987 0.760389
 0.003620 0.986772 0.005987 0.003620
 0.003620 0.139176 0.853584 0.003620

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/PBX3.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_PBX3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.69 seconds
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