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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.141 C 0.359 G 0.359 T 0.141 

MOTIF 1-ATGCGCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 1.7e-001
 0.839474 0.024016 0.077940 0.058570
 0.000463 0.110272 0.232345 0.656920
 0.009915 0.010636 0.956155 0.023295
 0.023295 0.906562 0.046848 0.023295
 0.000463 0.062418 0.936656 0.000463
 0.023295 0.883693 0.001184 0.091828
 0.694499 0.157373 0.079168 0.068959
 0.160693 0.219093 0.574087 0.046127

MOTIF 2-AGCCGSGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 8.8e-001
 0.982661 0.007251 0.007251 0.002837
 0.002837 0.007251 0.987076 0.002837
 0.002837 0.987076 0.007251 0.002837
 0.002837 0.987076 0.007251 0.002837
 0.002837 0.007251 0.987076 0.002837
 0.142683 0.427240 0.287394 0.142683
 0.002837 0.286944 0.707383 0.002837
 0.002837 0.987076 0.007251 0.002837

MOTIF 3-GAGCCCKC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.001831 0.156511 0.839827 0.001831
 0.951439 0.042050 0.004681 0.001831
 0.039200 0.094951 0.864017 0.001831
 0.092102 0.864017 0.004681 0.039200
 0.001831 0.864017 0.132320 0.001831
 0.001831 0.991657 0.004681 0.001831
 0.001831 0.004681 0.366637 0.626852
 0.092102 0.811116 0.004681 0.092102

MOTIF 4-TCCCRTCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.002217 0.005668 0.224308 0.767807
 0.002217 0.880577 0.114988 0.002217
 0.002217 0.989897 0.005668 0.002217
 0.111537 0.880577 0.005668 0.002217
 0.548816 0.005668 0.333979 0.111537
 0.002217 0.114988 0.114988 0.767807
 0.002217 0.989897 0.005668 0.002217
 0.002217 0.224659 0.770906 0.002217

MOTIF 5-CGGGGCCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.002972 0.986461 0.007596 0.002972
 0.002972 0.007596 0.986461 0.002972
 0.002972 0.007596 0.986461 0.002972
 0.002972 0.007596 0.986461 0.002972
 0.002972 0.154090 0.839967 0.002972
 0.002972 0.839967 0.154090 0.002972
 0.149466 0.693473 0.154090 0.002972
 0.002972 0.007596 0.154090 0.835343

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/NRF1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_NRF1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.57 seconds
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