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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.224 C 0.276 G 0.276 T 0.224 

MOTIF 1-AAGGTCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 9.5e-002
 0.715808 0.105572 0.127950 0.050670
 0.904208 0.025926 0.069061 0.000805
 0.050670 0.086152 0.777254 0.085924
 0.025738 0.075831 0.837440 0.060991
 0.025738 0.036247 0.100803 0.837212
 0.000805 0.852011 0.096433 0.050750
 0.812280 0.075790 0.061179 0.050750
 0.620379 0.139295 0.172654 0.067673

MOTIF 2-GAAATGCW STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 8.8e-001
 0.004517 0.005570 0.985395 0.004517
 0.844495 0.005570 0.145417 0.004517
 0.704649 0.005570 0.285263 0.004517
 0.984342 0.005570 0.005570 0.004517
 0.004517 0.005570 0.005570 0.984342
 0.004517 0.005570 0.985395 0.004517
 0.284660 0.705252 0.005570 0.004517
 0.564353 0.005570 0.145417 0.284660

MOTIF 3-ACTTCCTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.771286 0.057837 0.002216 0.168661
 0.057418 0.660462 0.169080 0.113040
 0.057418 0.224702 0.169259 0.548621
 0.057418 0.136663 0.002216 0.803703
 0.001797 0.938569 0.057837 0.001797
 0.057418 0.882948 0.057837 0.001797
 0.001797 0.025241 0.002216 0.970747
 0.080444 0.002216 0.804301 0.113040

MOTIF 4-CCCAGCTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.038600 0.868667 0.003445 0.089288
 0.002794 0.990967 0.003445 0.002794
 0.002794 0.817978 0.176434 0.002794
 0.903821 0.003445 0.003445 0.089288
 0.002794 0.003445 0.990967 0.002794
 0.002794 0.904473 0.089940 0.002794
 0.089288 0.003445 0.089940 0.817327
 0.175783 0.089940 0.731484 0.002794

MOTIF 5-CGGSSCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.003960 0.925901 0.004883 0.065256
 0.003960 0.004883 0.987197 0.003960
 0.003960 0.066179 0.925901 0.003960
 0.003960 0.311955 0.618829 0.065256
 0.065256 0.618829 0.311955 0.003960
 0.003960 0.925901 0.066179 0.003960
 0.003960 0.987197 0.004883 0.003960
 0.065256 0.004883 0.925901 0.003960

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/NR2F1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_NR2F1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.67 seconds
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