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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.193 C 0.307 G 0.307 T 0.193 

MOTIF 1-CAGAGGTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 9.5e-002
 0.017536 0.937009 0.027918 0.017536
 0.926627 0.027918 0.027918 0.017536
 0.017536 0.027918 0.937009 0.017536
 0.926627 0.027918 0.027918 0.017536
 0.017536 0.027918 0.937009 0.017536
 0.017536 0.027918 0.937009 0.017536
 0.017536 0.027918 0.027918 0.926627
 0.017536 0.937009 0.027918 0.017536

MOTIF 2-AMCACACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.844900 0.002588 0.002588 0.149924
 0.524767 0.412607 0.002588 0.060038
 0.001626 0.994161 0.002588 0.001626
 0.759361 0.178013 0.061000 0.001626
 0.001626 0.760511 0.002588 0.235275
 0.759361 0.236425 0.002588 0.001626
 0.060038 0.760511 0.177825 0.001626
 0.934786 0.002588 0.061000 0.001626

MOTIF 3-CGAGCGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.003878 0.986071 0.006174 0.003878
 0.003878 0.006174 0.986071 0.003878
 0.983775 0.006174 0.006174 0.003878
 0.003878 0.006174 0.986071 0.003878
 0.003878 0.707389 0.284855 0.003878
 0.003878 0.006174 0.986071 0.003878
 0.003878 0.986071 0.006174 0.003878
 0.003878 0.846730 0.145514 0.003878

MOTIF 4-GCTCCAGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.002911 0.213807 0.780372 0.002911
 0.002911 0.884958 0.109220 0.002911
 0.002911 0.004634 0.004634 0.987822
 0.046206 0.841663 0.109220 0.002911
 0.002911 0.989545 0.004634 0.002911
 0.778312 0.214143 0.004634 0.002911
 0.002911 0.213807 0.780372 0.002911
 0.002911 0.109220 0.884958 0.002911

MOTIF 5-CTTACTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.017536 0.937009 0.027918 0.017536
 0.017536 0.027918 0.027918 0.926627
 0.017536 0.027918 0.027918 0.926627
 0.926627 0.027918 0.027918 0.017536
 0.017536 0.937009 0.027918 0.017536
 0.017536 0.027918 0.027918 0.926627
 0.017536 0.937009 0.027918 0.017536
 0.017536 0.937009 0.027918 0.017536

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/NR2C2.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_NR2C2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.67 seconds
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