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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.205 C 0.295 G 0.295 T 0.205 

MOTIF 1-AGCCAATC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 1.7e-001
 0.927736 0.026809 0.026809 0.018645
 0.018645 0.026809 0.935900 0.018645
 0.018645 0.935900 0.026809 0.018645
 0.018645 0.935900 0.026809 0.018645
 0.927736 0.026809 0.026809 0.018645
 0.927736 0.026809 0.026809 0.018645
 0.018645 0.026809 0.026809 0.927736
 0.018645 0.935900 0.026809 0.018645

MOTIF 2-GGAAGTGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.001853 0.002664 0.993631 0.001853
 0.215597 0.002664 0.566143 0.215597
 0.867602 0.065272 0.065272 0.001853
 0.930211 0.065272 0.002664 0.001853
 0.001853 0.002664 0.993631 0.001853
 0.001853 0.002664 0.127881 0.867602
 0.152988 0.127881 0.529452 0.189679
 0.215597 0.503534 0.216408 0.064461

MOTIF 3-AGGGGCGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.707218 0.286436 0.003743 0.002603
 0.002603 0.003743 0.991051 0.002603
 0.002603 0.091713 0.903081 0.002603
 0.002603 0.003743 0.991051 0.002603
 0.002603 0.003743 0.991051 0.002603
 0.090574 0.815110 0.091713 0.002603
 0.002603 0.003743 0.991051 0.002603
 0.002603 0.091713 0.815110 0.090574

MOTIF 4-ATTGGTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.932848 0.002563 0.002563 0.062026
 0.001783 0.002563 0.002563 0.993091
 0.001783 0.002563 0.002563 0.993091
 0.001783 0.002563 0.993872 0.001783
 0.001783 0.027502 0.968933 0.001783
 0.122463 0.215435 0.002563 0.659539
 0.001783 0.933628 0.062807 0.001783
 0.582087 0.172011 0.183876 0.062026

MOTIF 5-GMGGCCKC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.003908 0.005619 0.920524 0.069949
 0.494381 0.496092 0.005619 0.003908
 0.069949 0.005619 0.788231 0.136201
 0.003908 0.005619 0.959226 0.031247
 0.031247 0.959226 0.005619 0.003908
 0.136201 0.788231 0.005619 0.069949
 0.003908 0.005619 0.496092 0.494381
 0.069949 0.920524 0.005619 0.003908

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/NFYB.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_NFYB/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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