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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.276 C 0.224 G 0.224 T 0.276 

MOTIF 1-AGAGAAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 8.8e-001
 0.874527 0.121172 0.001923 0.002378
 0.032190 0.121172 0.784637 0.062002
 0.909469 0.001923 0.001923 0.086684
 0.151438 0.061548 0.725013 0.062002
 0.993776 0.001923 0.001923 0.002378
 0.814903 0.001923 0.061548 0.121626
 0.695655 0.180796 0.001923 0.121626
 0.062002 0.061548 0.754825 0.121626

MOTIF 2-CCACAAAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.023407 0.869724 0.001664 0.105206
 0.053631 0.891074 0.001664 0.053631
 0.788318 0.001664 0.156388 0.053631
 0.053631 0.942648 0.001664 0.002057
 0.943041 0.001664 0.001664 0.053631
 0.642468 0.147513 0.001664 0.208355
 0.539319 0.104813 0.156388 0.199481
 0.002057 0.714834 0.229478 0.053631

MOTIF 3-CAAACCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.004892 0.740485 0.003958 0.250665
 0.741420 0.003958 0.003958 0.250665
 0.864503 0.126647 0.003958 0.004892
 0.864503 0.126647 0.003958 0.004892
 0.004892 0.863569 0.126647 0.004892
 0.004892 0.986258 0.003958 0.004892
 0.987192 0.003958 0.003958 0.004892
 0.864503 0.126647 0.003958 0.004892

MOTIF 4-GATTGGAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.005269 0.004263 0.853062 0.137406
 0.854069 0.004263 0.136399 0.005269
 0.137406 0.004263 0.004263 0.854069
 0.005269 0.004263 0.004263 0.986206
 0.005269 0.004263 0.985199 0.005269
 0.137406 0.004263 0.853062 0.005269
 0.931505 0.058963 0.004263 0.005269
 0.005269 0.985199 0.004263 0.005269

MOTIF 5-GGCTGGAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.025127 0.020327 0.929418 0.025127
 0.025127 0.020327 0.929418 0.025127
 0.025127 0.929418 0.020327 0.025127
 0.025127 0.020327 0.020327 0.934218
 0.025127 0.020327 0.929418 0.025127
 0.025127 0.020327 0.929418 0.025127
 0.934218 0.020327 0.020327 0.025127
 0.025127 0.020327 0.929418 0.025127

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/NFATC3.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_NFATC3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.74 seconds
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