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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.283 C 0.217 G 0.217 T 0.283 

MOTIF 1-AAAAATGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.988699 0.003424 0.003424 0.004454
 0.988699 0.003424 0.003424 0.004454
 0.879495 0.003424 0.112628 0.004454
 0.660735 0.003424 0.112628 0.223214
 0.988699 0.003424 0.003424 0.004454
 0.004454 0.003424 0.003424 0.988699
 0.113658 0.003424 0.769260 0.113658
 0.988699 0.003424 0.003424 0.004454

MOTIF 2-ARTGGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.861427 0.002062 0.133829 0.002683
 0.332004 0.002062 0.663251 0.002683
 0.068460 0.002062 0.002062 0.927416
 0.002683 0.067840 0.926795 0.002683
 0.002683 0.002062 0.992572 0.002683
 0.993193 0.002062 0.002062 0.002683
 0.927416 0.002062 0.002062 0.068460
 0.993193 0.002062 0.002062 0.002683

MOTIF 3-AAGAGAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.771100 0.002312 0.149824 0.076764
 0.844856 0.076068 0.002312 0.076764
 0.150520 0.002312 0.770404 0.076764
 0.918612 0.002312 0.076068 0.003008
 0.003008 0.076068 0.622892 0.298032
 0.961835 0.002312 0.032845 0.003008
 0.992367 0.002312 0.002312 0.003008
 0.150520 0.696648 0.002312 0.150520

MOTIF 4-CTGAGTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.252080 0.687742 0.001760 0.058418
 0.002289 0.001760 0.001760 0.994192
 0.058418 0.057889 0.712837 0.170856
 0.938063 0.001760 0.001760 0.058418
 0.058418 0.058161 0.881132 0.002289
 0.002289 0.001760 0.001760 0.994192
 0.114547 0.825275 0.057889 0.002289
 0.994192 0.001760 0.001760 0.002289

MOTIF 5-MCACATCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.432244 0.562595 0.002243 0.002918
 0.002918 0.991920 0.002243 0.002918
 0.706378 0.002243 0.073797 0.217581
 0.074473 0.634149 0.002243 0.289135
 0.777933 0.145352 0.073797 0.002918
 0.205269 0.002243 0.002243 0.790245
 0.002918 0.991920 0.002243 0.002918
 0.247432 0.002243 0.002243 0.748081

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/NFATC1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_NFATC1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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