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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.148 C 0.352 G 0.352 T 0.148 

MOTIF 1-CGCGCACG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 5.0e-001
 0.002620 0.988540 0.006220 0.002620
 0.002620 0.006220 0.988540 0.002620
 0.002620 0.865997 0.128763 0.002620
 0.002620 0.006220 0.988540 0.002620
 0.002620 0.988540 0.006220 0.002620
 0.984941 0.006220 0.006220 0.002620
 0.002620 0.743059 0.251701 0.002620
 0.002620 0.251701 0.743059 0.002620

MOTIF 2-CCGGCCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.002621 0.865944 0.128814 0.002621
 0.002621 0.988536 0.006222 0.002621
 0.002621 0.006222 0.988536 0.002621
 0.002621 0.251800 0.742958 0.002621
 0.002621 0.865944 0.128814 0.002621
 0.002621 0.988536 0.006222 0.002621
 0.125213 0.865944 0.006222 0.002621
 0.984935 0.006222 0.006222 0.002621

MOTIF 3-AGGGCCGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.697380 0.101303 0.150942 0.050375
 0.050375 0.101144 0.837992 0.010488
 0.021472 0.051824 0.876329 0.050375
 0.149016 0.051824 0.798105 0.001055
 0.021472 0.905233 0.022920 0.050375
 0.001055 0.995388 0.002503 0.001055
 0.084009 0.002503 0.912433 0.001055
 0.050375 0.896746 0.051824 0.001055

MOTIF 4-CTCCGCCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.013473 0.941073 0.031982 0.013473
 0.013473 0.031982 0.031982 0.922564
 0.013473 0.941073 0.031982 0.013473
 0.013473 0.941073 0.031982 0.013473
 0.013473 0.031982 0.941073 0.013473
 0.013473 0.941073 0.031982 0.013473
 0.013473 0.941073 0.031982 0.013473
 0.922564 0.031982 0.031982 0.013473

MOTIF 5-ARAAGCAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.877246 0.005548 0.114868 0.002337
 0.548936 0.005548 0.443179 0.002337
 0.877246 0.005548 0.005548 0.111657
 0.767927 0.224188 0.005548 0.002337
 0.002337 0.005548 0.880457 0.111657
 0.111657 0.880457 0.005548 0.002337
 0.767575 0.005548 0.224539 0.002337
 0.220977 0.771138 0.005548 0.002337

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MYC.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MYC/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.63 seconds
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