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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.251 C 0.249 G 0.249 T 0.251 

MOTIF 1-CCACAGAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.004797 0.853414 0.136993 0.004797
 0.004797 0.985664 0.004743 0.004797
 0.853467 0.136993 0.004743 0.004797
 0.004797 0.985664 0.004743 0.004797
 0.985717 0.004743 0.004743 0.004797
 0.059544 0.004743 0.798667 0.137046
 0.721218 0.136993 0.004743 0.137046
 0.004797 0.004743 0.985664 0.004797

MOTIF 2-AATTTTAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.931945 0.022600 0.022600 0.022855
 0.931945 0.022600 0.022600 0.022855
 0.022855 0.022600 0.022600 0.931945
 0.022855 0.022600 0.022600 0.931945
 0.022855 0.022600 0.022600 0.931945
 0.022855 0.022600 0.022600 0.931945
 0.931945 0.022600 0.022600 0.022855
 0.022855 0.931691 0.022600 0.022855

MOTIF 3-GAAGGAAR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.064073 0.002218 0.931467 0.002243
 0.931492 0.064048 0.002218 0.002243
 0.931492 0.002218 0.064048 0.002243
 0.064073 0.002218 0.931467 0.002243
 0.125903 0.002218 0.684146 0.187733
 0.869662 0.064048 0.002218 0.064073
 0.869662 0.064048 0.064048 0.002243
 0.374422 0.002218 0.621117 0.002243

MOTIF 4-ACAACAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.931945 0.022600 0.022600 0.022855
 0.022855 0.931691 0.022600 0.022855
 0.931945 0.022600 0.022600 0.022855
 0.931945 0.022600 0.022600 0.022855
 0.022855 0.931691 0.022600 0.022855
 0.931945 0.022600 0.022600 0.022855
 0.022855 0.022600 0.931691 0.022855
 0.931945 0.022600 0.022600 0.022855

MOTIF 5-GTGTGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.222447 0.003918 0.769673 0.003962
 0.003962 0.003918 0.003918 0.988202
 0.003962 0.003918 0.988158 0.003962
 0.003962 0.003918 0.003918 0.988202
 0.003962 0.003918 0.988158 0.003962
 0.660474 0.003918 0.222403 0.113205
 0.660474 0.113161 0.003918 0.222447
 0.988202 0.003918 0.003918 0.003962

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MYB.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MYB/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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