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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.177 C 0.323 G 0.323 T 0.177 

MOTIF 1-CACGTGGK STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.0e-001
 0.001656 0.993662 0.003026 0.001656
 0.992291 0.003026 0.003026 0.001656
 0.001656 0.993662 0.003026 0.001656
 0.001656 0.003026 0.993662 0.001656
 0.066563 0.003026 0.003026 0.927384
 0.001656 0.003026 0.993662 0.001656
 0.001656 0.110679 0.886010 0.001656
 0.001656 0.003026 0.468480 0.526838

MOTIF 2-CTGYGGCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.0e+000
 0.000764 0.907221 0.001397 0.090619
 0.000764 0.151251 0.205647 0.642338
 0.180570 0.121203 0.697464 0.000764
 0.000764 0.265647 0.223456 0.510133
 0.000764 0.133602 0.864870 0.000764
 0.060667 0.001397 0.787415 0.150522
 0.060667 0.907221 0.031348 0.000764
 0.000764 0.061300 0.937172 0.000764

MOTIF 3-AAGCAGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.673709 0.109500 0.109500 0.107290
 0.987575 0.004878 0.004878 0.002669
 0.002669 0.109500 0.885163 0.002669
 0.002669 0.737231 0.152810 0.107290
 0.987575 0.004878 0.004878 0.002669
 0.211912 0.004878 0.780541 0.002669
 0.002669 0.737231 0.152810 0.107290
 0.107290 0.675919 0.214122 0.002669

MOTIF 4-ATGTGCTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.925164 0.029382 0.029382 0.016073
 0.016073 0.029382 0.029382 0.925164
 0.016073 0.029382 0.938473 0.016073
 0.016073 0.029382 0.029382 0.925164
 0.016073 0.029382 0.938473 0.016073
 0.016073 0.938473 0.029382 0.016073
 0.016073 0.029382 0.029382 0.925164
 0.016073 0.938473 0.029382 0.016073

MOTIF 5-GCYGGGAS STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.001423 0.058388 0.938766 0.001423
 0.001423 0.994553 0.002601 0.001423
 0.057210 0.301836 0.081482 0.559472
 0.057210 0.002601 0.938766 0.001423
 0.168784 0.002601 0.827192 0.001423
 0.001423 0.058388 0.938766 0.001423
 0.676396 0.058388 0.263793 0.001423
 0.001423 0.337502 0.659652 0.001423

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MXI1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MXI1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.69 seconds
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