********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.256 C 0.244 G 0.244 T 0.256 

MOTIF 1-CWCATGWG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 68 P= 9.8e-001
 0.090960 0.638285 0.120357 0.150397
 0.409101 0.050889 0.107474 0.432537
 0.050950 0.787456 0.094069 0.067525
 0.740964 0.067463 0.133762 0.057811
 0.057811 0.133762 0.067463 0.740964
 0.067525 0.094069 0.787456 0.050950
 0.432537 0.107474 0.050889 0.409101
 0.150397 0.120357 0.638285 0.090960

MOTIF 2-AGACNACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.979146 0.006832 0.006832 0.007191
 0.201582 0.006832 0.784396 0.007191
 0.979146 0.006832 0.006832 0.007191
 0.007191 0.978787 0.006832 0.007191
 0.201582 0.201223 0.201223 0.395973
 0.979146 0.006832 0.006832 0.007191
 0.007191 0.784396 0.006832 0.201582
 0.979146 0.006832 0.006832 0.007191

MOTIF 3-AGAGGCTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.982549 0.005717 0.005717 0.006017
 0.006017 0.005717 0.819581 0.168685
 0.982549 0.005717 0.005717 0.006017
 0.168685 0.005717 0.656913 0.168685
 0.006017 0.005717 0.982249 0.006017
 0.168685 0.819581 0.005717 0.006017
 0.006017 0.005717 0.005717 0.982549
 0.006017 0.005717 0.982249 0.006017

MOTIF 4-TAGACAGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.168774 0.005720 0.005720 0.819787
 0.819787 0.005720 0.005720 0.168774
 0.006020 0.005720 0.982239 0.006020
 0.819787 0.168473 0.005720 0.006020
 0.168774 0.819486 0.005720 0.006020
 0.982540 0.005720 0.005720 0.006020
 0.006020 0.168473 0.819486 0.006020
 0.006020 0.005720 0.982239 0.006020

MOTIF 5-AAGGAAGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.665874 0.002119 0.304812 0.027195
 0.933226 0.002119 0.062424 0.002231
 0.002231 0.002119 0.993419 0.002231
 0.062535 0.002119 0.631591 0.303754
 0.993531 0.002119 0.002119 0.002231
 0.993531 0.002119 0.002119 0.002231
 0.062535 0.002119 0.752200 0.183145
 0.062535 0.122923 0.183131 0.631411

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MTA3.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MTA3/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.75 seconds
********************************************************************************