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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.313 C 0.187 G 0.187 T 0.313 

MOTIF 1-GCTAATTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 1.1e-002
 0.018295 0.115582 0.759858 0.106264
 0.102193 0.747042 0.000905 0.149860
 0.001516 0.149141 0.000905 0.848438
 0.719433 0.244587 0.000905 0.035075
 0.996674 0.000905 0.000905 0.001516
 0.035075 0.000905 0.000905 0.963115
 0.001516 0.000905 0.243091 0.754488
 0.929556 0.000905 0.000905 0.068634

MOTIF 2-AAGATATG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 5.0e-001
 0.832492 0.156515 0.004109 0.006884
 0.680086 0.004109 0.308920 0.006884
 0.069975 0.004109 0.919031 0.006884
 0.984897 0.004109 0.004109 0.006884
 0.006884 0.004109 0.156515 0.832492
 0.832492 0.004109 0.004109 0.159290
 0.006884 0.004109 0.004109 0.984897
 0.159290 0.004109 0.829717 0.006884

MOTIF 3-AAMTGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.885282 0.002814 0.002814 0.109090
 0.989657 0.002814 0.002814 0.004715
 0.424238 0.568233 0.002814 0.004715
 0.004715 0.002814 0.002814 0.989657
 0.047922 0.002814 0.944548 0.004715
 0.885282 0.002814 0.002814 0.109090
 0.780571 0.002814 0.211900 0.004715
 0.989657 0.002814 0.002814 0.004715

MOTIF 4-TCAAAAGN STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.082557 0.004848 0.004848 0.907746
 0.008122 0.978907 0.004848 0.008122
 0.982181 0.004848 0.004848 0.008122
 0.982181 0.004848 0.004848 0.008122
 0.982181 0.004848 0.004848 0.008122
 0.982181 0.004848 0.004848 0.008122
 0.008122 0.004848 0.978907 0.008122
 0.187931 0.365045 0.184657 0.262366

MOTIF 5-ACACAAAR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.989189 0.002941 0.002941 0.004928
 0.004928 0.768676 0.002941 0.223455
 0.989189 0.002941 0.002941 0.004928
 0.004928 0.878115 0.112030 0.004928
 0.989189 0.002941 0.002941 0.004928
 0.989189 0.002941 0.002941 0.004928
 0.880101 0.002941 0.112030 0.004928
 0.443396 0.002941 0.548735 0.004928

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MTA2.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MTA2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.69 seconds
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