********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.239 C 0.261 G 0.261 T 0.239 

MOTIF 1-AGTGATCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.666155 0.042747 0.193178 0.097920
 0.003265 0.003563 0.989907 0.003265
 0.097920 0.192873 0.003563 0.705644
 0.042449 0.098218 0.856068 0.003265
 0.989609 0.003563 0.003563 0.003265
 0.097920 0.193178 0.193178 0.515725
 0.003265 0.895252 0.098218 0.003265
 0.003265 0.895252 0.003563 0.097920

MOTIF 2-CCTYAGCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.005250 0.831566 0.005729 0.157455
 0.005250 0.983770 0.005729 0.005250
 0.005250 0.005729 0.005729 0.983292
 0.005250 0.374951 0.005729 0.614070
 0.831087 0.005729 0.157934 0.005250
 0.005250 0.005729 0.831566 0.157455
 0.005250 0.983770 0.005729 0.005250
 0.005250 0.983770 0.005729 0.005250

MOTIF 3-CAGCAGMC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.004229 0.986928 0.004614 0.004229
 0.618373 0.250192 0.127206 0.004229
 0.004229 0.004614 0.986928 0.004229
 0.004229 0.986928 0.004614 0.004229
 0.863951 0.127206 0.004614 0.004229
 0.004229 0.004614 0.986928 0.004229
 0.373190 0.617967 0.004614 0.004229
 0.004229 0.986928 0.004614 0.004229

MOTIF 4-GAGATCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.021736 0.023718 0.932809 0.021736
 0.930827 0.023718 0.023718 0.021736
 0.021736 0.023718 0.932809 0.021736
 0.930827 0.023718 0.023718 0.021736
 0.021736 0.023718 0.023718 0.930827
 0.021736 0.932809 0.023718 0.021736
 0.930827 0.023718 0.023718 0.021736
 0.021736 0.023718 0.932809 0.021736

MOTIF 5-CCCGAGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.021736 0.932809 0.023718 0.021736
 0.021736 0.932809 0.023718 0.021736
 0.021736 0.932809 0.023718 0.021736
 0.021736 0.023718 0.932809 0.021736
 0.930827 0.023718 0.023718 0.021736
 0.021736 0.023718 0.932809 0.021736
 0.930827 0.023718 0.023718 0.021736
 0.930827 0.023718 0.023718 0.021736

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MLLT1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MLLT1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.76 seconds
********************************************************************************