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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.296 C 0.204 G 0.204 T 0.296 

MOTIF 1-AAGCCAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.731806 0.002546 0.089016 0.176632
 0.991216 0.002546 0.002546 0.003691
 0.176910 0.089016 0.608116 0.125957
 0.090162 0.817131 0.002546 0.090162
 0.003691 0.817131 0.175487 0.003691
 0.904746 0.002546 0.089016 0.003691
 0.904746 0.089016 0.002546 0.003691
 0.991216 0.002546 0.002546 0.003691

MOTIF 2-AAATAGTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.987547 0.003610 0.003610 0.005233
 0.742364 0.003610 0.248793 0.005233
 0.987547 0.003610 0.003610 0.005233
 0.005233 0.003610 0.003610 0.987547
 0.864955 0.003610 0.003610 0.127825
 0.005233 0.003610 0.863332 0.127825
 0.005233 0.003610 0.003610 0.987547
 0.741969 0.003610 0.003610 0.250811

MOTIF 3-CAGTTACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 4 P= 1.0e+000
 0.026900 0.927645 0.018555 0.026900
 0.935991 0.018555 0.018555 0.026900
 0.026900 0.018555 0.927645 0.026900
 0.026900 0.018555 0.018555 0.935991
 0.026900 0.018555 0.018555 0.935991
 0.935991 0.018555 0.018555 0.026900
 0.026900 0.927645 0.018555 0.026900
 0.026900 0.927645 0.018555 0.026900

MOTIF 4-TAAAAATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.002736 0.001887 0.001887 0.993489
 0.800985 0.065987 0.001887 0.131141
 0.855433 0.001887 0.001887 0.140792
 0.774450 0.001887 0.194391 0.029271
 0.865187 0.001887 0.001887 0.131038
 0.993489 0.001887 0.001887 0.002736
 0.002736 0.065987 0.001887 0.929390
 0.993489 0.001887 0.001887 0.002736

MOTIF 5-AACCAGTM STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.871284 0.120287 0.003441 0.004988
 0.939760 0.051811 0.003441 0.004988
 0.238681 0.752890 0.003441 0.004988
 0.004988 0.986583 0.003441 0.004988
 0.988131 0.003441 0.003441 0.004988
 0.004988 0.003441 0.986583 0.004988
 0.238681 0.003441 0.003441 0.754438
 0.355528 0.519197 0.003441 0.121835

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MEF2C.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MEF2C/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.85 seconds
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