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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.206 C 0.294 G 0.294 T 0.206 

MOTIF 1-CCAGGGGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 3.5e-001
 0.001290 0.952237 0.001837 0.044637
 0.044637 0.952237 0.001837 0.001290
 0.664785 0.132296 0.088530 0.114390
 0.044637 0.106474 0.847599 0.001290
 0.001290 0.045183 0.952237 0.001290
 0.088123 0.001837 0.908751 0.001290
 0.044637 0.045183 0.908890 0.001290
 0.864578 0.001837 0.001837 0.131749

MOTIF 2-GGCAGCCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 8.8e-001
 0.081829 0.001708 0.777501 0.138962
 0.081829 0.139341 0.777631 0.001200
 0.098518 0.858260 0.042023 0.001200
 0.914690 0.001708 0.001708 0.081894
 0.041514 0.139341 0.817945 0.001200
 0.058203 0.841571 0.099026 0.001200
 0.179147 0.697002 0.001708 0.122143
 0.259776 0.001708 0.576058 0.162458

MOTIF 3-ACCTGGGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.981373 0.006893 0.006893 0.004841
 0.004841 0.983425 0.006893 0.004841
 0.167510 0.820756 0.006893 0.004841
 0.004841 0.006893 0.006893 0.981373
 0.004841 0.006893 0.820756 0.167510
 0.004841 0.006893 0.820756 0.167510
 0.004841 0.006893 0.983425 0.004841
 0.167510 0.006893 0.820756 0.004841

MOTIF 4-ACCTCCCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.981373 0.006893 0.006893 0.004841
 0.167510 0.820756 0.006893 0.004841
 0.004841 0.658088 0.169561 0.167510
 0.004841 0.006893 0.006893 0.981373
 0.004841 0.983425 0.006893 0.004841
 0.167510 0.820756 0.006893 0.004841
 0.004841 0.983425 0.006893 0.004841
 0.981373 0.006893 0.006893 0.004841

MOTIF 5-CCTCCCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.066147 0.736309 0.066957 0.130588
 0.066147 0.864985 0.002722 0.066147
 0.066147 0.002722 0.002722 0.928410
 0.001912 0.993455 0.002722 0.001912
 0.066147 0.864985 0.066957 0.001912
 0.001912 0.966864 0.002722 0.028503
 0.066147 0.864985 0.066957 0.001912
 0.735292 0.131398 0.002722 0.130588

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MEF2B.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MEF2B/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.63 seconds
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