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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.314 C 0.186 G 0.186 T 0.314 

MOTIF 1-AAAAATAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 6.9e-002
 0.769293 0.075716 0.045499 0.109492
 0.906995 0.001190 0.045499 0.046315
 0.906853 0.001190 0.089951 0.002006
 0.991587 0.001190 0.001190 0.006032
 0.906853 0.001190 0.001190 0.090767
 0.002006 0.001190 0.019533 0.977271
 0.995614 0.001190 0.001190 0.002006
 0.376411 0.009665 0.611918 0.002006

MOTIF 2-CCCACAGK STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.004461 0.791337 0.199740 0.004461
 0.004461 0.988430 0.002647 0.004461
 0.004461 0.988430 0.002647 0.004461
 0.694604 0.002647 0.199740 0.103008
 0.004461 0.889883 0.101194 0.004461
 0.694604 0.101194 0.199740 0.004461
 0.004461 0.101194 0.889883 0.004461
 0.103008 0.002647 0.593927 0.300418

MOTIF 3-AGTGAAAS STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.989467 0.002858 0.002858 0.004817
 0.048860 0.002858 0.730336 0.217946
 0.048860 0.002858 0.109252 0.839030
 0.111210 0.002858 0.881115 0.004817
 0.989467 0.002858 0.002858 0.004817
 0.989467 0.002858 0.002858 0.004817
 0.989467 0.002858 0.002858 0.004817
 0.004817 0.560905 0.323068 0.111210

MOTIF 4-GTAACTTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.028527 0.016927 0.926018 0.028527
 0.028527 0.016927 0.016927 0.937618
 0.937618 0.016927 0.016927 0.028527
 0.937618 0.016927 0.016927 0.028527
 0.028527 0.926018 0.016927 0.028527
 0.028527 0.016927 0.016927 0.937618
 0.028527 0.016927 0.016927 0.937618
 0.937618 0.016927 0.016927 0.028527

MOTIF 5-AACAGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.937618 0.016927 0.016927 0.028527
 0.937618 0.016927 0.016927 0.028527
 0.028527 0.926018 0.016927 0.028527
 0.937618 0.016927 0.016927 0.028527
 0.028527 0.016927 0.926018 0.028527
 0.937618 0.016927 0.016927 0.028527
 0.937618 0.016927 0.016927 0.028527
 0.937618 0.016927 0.016927 0.028527

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MEF2A.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MEF2A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.69 seconds
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