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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.126 C 0.374 G 0.374 T 0.126 

MOTIF 1-AGGGGCGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 6.7e-001
 0.884455 0.111890 0.002735 0.000921
 0.051601 0.002735 0.894063 0.051601
 0.102608 0.104259 0.792212 0.000921
 0.102444 0.002735 0.843219 0.051601
 0.000921 0.002735 0.995424 0.000921
 0.000921 0.974444 0.002735 0.021901
 0.051601 0.053416 0.843382 0.051601
 0.000921 0.002735 0.995424 0.000921

MOTIF 2-CGGGACCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.002953 0.985319 0.008775 0.002953
 0.002953 0.008775 0.985319 0.002953
 0.002953 0.008775 0.659630 0.328642
 0.002953 0.008775 0.985319 0.002953
 0.979497 0.008775 0.008775 0.002953
 0.002953 0.659630 0.008775 0.328642
 0.002953 0.822736 0.008775 0.165536
 0.002953 0.008775 0.985319 0.002953

MOTIF 3-YCCCACCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.001782 0.361204 0.005295 0.631719
 0.001782 0.991140 0.005295 0.001782
 0.001782 0.991140 0.005295 0.001782
 0.001782 0.991140 0.005295 0.001782
 0.692967 0.005295 0.299956 0.001782
 0.001782 0.754294 0.242141 0.001782
 0.042398 0.950524 0.005295 0.001782
 0.001782 0.005295 0.005295 0.987627

MOTIF 4-GAGCACAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.002956 0.008784 0.985304 0.002956
 0.816723 0.171537 0.008784 0.002956
 0.002956 0.171537 0.822550 0.002956
 0.165709 0.822550 0.008784 0.002956
 0.979476 0.008784 0.008784 0.002956
 0.002956 0.822550 0.171537 0.002956
 0.816723 0.008784 0.008784 0.165709
 0.002956 0.008784 0.985304 0.002956

MOTIF 5-CCCCGGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.096093 0.802720 0.099473 0.001714
 0.021249 0.830223 0.146814 0.001714
 0.048904 0.944288 0.005094 0.001714
 0.001714 0.991478 0.005094 0.001714
 0.001714 0.005094 0.991478 0.001714
 0.001714 0.005094 0.944288 0.048904
 0.001714 0.146814 0.830223 0.021249
 0.001714 0.099473 0.802720 0.096093

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MAZ.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MAZ/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.54 seconds
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