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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.296 C 0.204 G 0.204 T 0.296 

MOTIF 1-AGTCAGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 169 P= 4.3e-003
 0.862776 0.045530 0.056666 0.035028
 0.000481 0.229091 0.769948 0.000481
 0.041273 0.000330 0.000330 0.958066
 0.049339 0.915987 0.000330 0.034344
 0.976349 0.000330 0.022839 0.000481
 0.000481 0.000330 0.921436 0.077752
 0.000481 0.987463 0.011576 0.000481
 0.922165 0.011576 0.065778 0.000481

MOTIF 2-AWCWWGWT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 8.8e-001
 0.704989 0.141630 0.001374 0.152007
 0.438175 0.094953 0.071502 0.395370
 0.091481 0.731837 0.071502 0.105180
 0.372069 0.094878 0.011051 0.522002
 0.522002 0.011051 0.094878 0.372069
 0.105180 0.071502 0.731837 0.091481
 0.395370 0.071502 0.094953 0.438175
 0.152007 0.001374 0.141630 0.704989

MOTIF 3-AATATTTR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.980302 0.005702 0.005702 0.008294
 0.980302 0.005702 0.005702 0.008294
 0.008294 0.005702 0.005702 0.980302
 0.980302 0.005702 0.005702 0.008294
 0.008294 0.005702 0.005702 0.980302
 0.008294 0.005702 0.005702 0.980302
 0.202321 0.005702 0.005702 0.786275
 0.397598 0.005702 0.588406 0.008294

MOTIF 4-AAAYARAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.926065 0.004215 0.004215 0.065505
 0.698586 0.004215 0.291068 0.006131
 0.985439 0.004215 0.004215 0.006131
 0.006131 0.350442 0.004215 0.639212
 0.985439 0.004215 0.004215 0.006131
 0.352358 0.147642 0.493869 0.006131
 0.842012 0.004215 0.147642 0.006131
 0.268306 0.004215 0.721348 0.006131

MOTIF 5-ACTWKGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.983511 0.004773 0.004773 0.006943
 0.006943 0.981342 0.004773 0.006943
 0.006943 0.004773 0.004773 0.983511
 0.495751 0.004773 0.004773 0.494703
 0.006943 0.004773 0.330121 0.658164
 0.006943 0.004773 0.981342 0.006943
 0.006943 0.981342 0.004773 0.006943
 0.983511 0.004773 0.004773 0.006943

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/MAFK.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_MAFK/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.59 seconds
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