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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.116 C 0.385 G 0.385 T 0.116 

MOTIF 1-CAGCTGCT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.000893 0.941642 0.056572 0.000893
 0.617451 0.163769 0.164288 0.054492
 0.000893 0.056572 0.941642 0.000893
 0.000893 0.834444 0.056572 0.108091
 0.027692 0.163769 0.002973 0.805565
 0.054492 0.110171 0.780846 0.054492
 0.108091 0.888043 0.002973 0.000893
 0.054492 0.002973 0.002973 0.939562

MOTIF 2-GGYCGCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.001846 0.006146 0.990161 0.001846
 0.001846 0.006146 0.990161 0.001846
 0.001846 0.657752 0.006146 0.334255
 0.001846 0.879358 0.006146 0.112649
 0.112649 0.116949 0.768555 0.001846
 0.001846 0.990161 0.006146 0.001846
 0.001846 0.990161 0.006146 0.001846
 0.001846 0.990161 0.006146 0.001846

MOTIF 3-AAGGCCGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.979243 0.009023 0.009023 0.002711
 0.979243 0.009023 0.009023 0.002711
 0.002711 0.009023 0.985555 0.002711
 0.165379 0.009023 0.822887 0.002711
 0.002711 0.985555 0.009023 0.002711
 0.002711 0.822887 0.171692 0.002711
 0.002711 0.171692 0.822887 0.002711
 0.002711 0.822887 0.171692 0.002711

MOTIF 4-CGGCGGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.001303 0.821501 0.019289 0.157907
 0.001303 0.004337 0.993058 0.001303
 0.001303 0.082513 0.914881 0.001303
 0.001303 0.836453 0.004337 0.157907
 0.001303 0.160941 0.836453 0.001303
 0.001303 0.004337 0.993058 0.001303
 0.990024 0.004337 0.004337 0.001303
 0.001303 0.036699 0.960696 0.001303

MOTIF 5-GGGACGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 1.0e+000
 0.000533 0.047007 0.951927 0.000533
 0.000533 0.142976 0.855958 0.000533
 0.000533 0.065857 0.933077 0.000533
 0.712251 0.248374 0.038842 0.000533
 0.000533 0.919937 0.001775 0.077755
 0.000533 0.174966 0.823968 0.000533
 0.128492 0.618787 0.097744 0.154977
 0.045765 0.097744 0.637431 0.219060

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/LARP7.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_LARP7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.63 seconds
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